view Blast output page example trimmed.html @ 14:0b33898bba45

small bugfixes (one for python 3.4)
author Jan Kanis <jan.code@jankanis.nl>
date Mon, 12 May 2014 17:32:01 +0200
parents 34211f5b83fd
children
line wrap: on
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml"><head>

<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge,chrome=1">
<meta name="jig" content="ncbitoggler ncbiautocomplete ncbilocalnav ncbigrid ncbipopper">
<meta name="ncbitoggler" content="animation:'none'">
<meta name="ncbipopper" content="animation:'none',closeEvent: 'click',openEvent: 'click',destPosition: 'top right',triggerPosition: 'bottom right'">

<meta name="ncbi_app" content="blast">
<meta name="ncbi_pdid" content="blastresults">
<meta name="ncbi_stat" content="false">
<meta name="ncbi_sessionid" content="8A8E11EE2CABF371_0000SID">
<meta name="ncbi_phid" content="5AAB74D7368F2C81000000000000C9C8">
<script type="text/javascript"> var ncbi_startTime = new Date(); </script>
<title>NCBI Blast:Nucleotide Sequence (16 letters)</title>
<script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jig.js"></script><link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/jig_002.themenull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_003.ncbitogglernull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbitogglernull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_003.ncbiautocompletenull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbiautocompletenull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbibasicmenunull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery.ncbibasicmenunull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_003.ncbimenunull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbimenunull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_003.ncbilocalnavnull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery.ncbilocalnavnull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_002.buttonnull"></script><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery.ncbibuttonnull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_003.ncbibuttonnull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_004.ncbipoppernull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_003.ncbipoppernull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_003.ncbigridnull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery.ncbigridnull"><link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/jig.themenull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery.ncbitogglernull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_002_002.ncbitogglernull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_002_002.ncbiautocompletenull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery.ncbiautocompletenull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_003.ncbibasicmenunull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_002_002.ncbibasicmenunull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_002_002.ncbimenunull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery.ncbimenunull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbilocalnavnull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_002_002.ncbilocalnavnull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery.buttonnull"></script><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbibuttonnull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_002_002.ncbibuttonnull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbipoppernull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery.ncbipoppernull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_002_002.ncbigridnull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbigridnull"><link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/jig.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_002.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_005.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_004.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_004.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_007.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_003.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_007.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_003.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_008.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_008.js"></script><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_005.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_009.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_006.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_006.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_002.css">
<script type="text/javascript">    jQuery.getScript("/core/alerts/alerts.js", function() {
        galert(['div#header', 'body > *:nth-child(1)'])
    });</script>
<link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/main.css" media="screen">
<link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/blastRes.css" media="screen">
<!--[if IE]>
<link rel="stylesheet" type="text/css" href="css/descriptionsIE.css" media="screen" />
<![endif]-->
<link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/print.css" media="print">
<!--[if lte IE 6]>
<link rel="stylesheet" type="text/css" href="css/ie6_or_less.css" />
<![endif]-->
<link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/blastReq.css" media="screen">
<link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/results.css" media="screen">
<link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/dynFormatRes.css" media="screen">

<style media="print" type="text/css">.print-log { position:absolute;left:-10000px;top:auto;width:1px;height:1px;overflow:hidden; }.print-log li { list-style-image: url('/stat?jsevent=print&ncbi_app=blast&ncbi_pdid=blastresults&ncbi_phid=5AAB74D7368F2C81000000000000C9C8'); }</style><style type="text/css">.print-log { position:absolute;left:-10000px;top:auto;width:1px;height:1px;overflow:hidden; }</style><style type="text/css" charset="utf-8">/* See license.txt for terms of usage */
/** reset styling **/
.firebugResetStyles {
    z-index: 2147483646 !important;
    top: 0 !important;
    left: 0 !important;
    display: block !important;
    border: 0 none !important;
    margin: 0 !important;
    padding: 0 !important;
    outline: 0 !important;
    min-width: 0 !important;
    max-width: none !important;
    min-height: 0 !important;
    max-height: none !important;
    position: fixed !important;
    transform: rotate(0deg) !important;
    transform-origin: 50% 50% !important;
    border-radius: 0 !important;
    box-shadow: none !important;
    background: transparent none !important;
    pointer-events: none !important;
    white-space: normal !important;
}

.firebugBlockBackgroundColor {
    background-color: transparent !important;
}

.firebugResetStyles:before, .firebugResetStyles:after {
    content: "" !important;
}
/**actual styling to be modified by firebug theme**/
.firebugCanvas {
    display: none !important;
}

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
.firebugLayoutBox {
    width: auto !important;
    position: static !important;
}

.firebugLayoutBoxOffset {
    opacity: 0.8 !important;
    position: fixed !important;
}

.firebugLayoutLine {
    opacity: 0.4 !important;
    background-color: #000000 !important;
}

.firebugLayoutLineLeft, .firebugLayoutLineRight {
    width: 1px !important;
    height: 100% !important;
}

.firebugLayoutLineTop, .firebugLayoutLineBottom {
    width: 100% !important;
    height: 1px !important;
}

.firebugLayoutLineTop {
    margin-top: -1px !important;
    border-top: 1px solid #999999 !important;
}

.firebugLayoutLineRight {
    border-right: 1px solid #999999 !important;
}

.firebugLayoutLineBottom {
    border-bottom: 1px solid #999999 !important;
}

.firebugLayoutLineLeft {
    margin-left: -1px !important;
    border-left: 1px solid #999999 !important;
}

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
.firebugLayoutBoxParent {
    border-top: 0 none !important;
    border-right: 1px dashed #E00 !important;
    border-bottom: 1px dashed #E00 !important;
    border-left: 0 none !important;
    position: fixed !important;
    width: auto !important;
}

.firebugRuler{
    position: absolute !important;
}

.firebugRulerH {
    top: -15px !important;
    left: 0 !important;
    width: 100% !important;
    height: 14px !important;
    background: url("data:image/png,%89PNG%0D%0A%1A%0A%00%00%00%0DIHDR%00%00%13%88%00%00%00%0E%08%02%00%00%00L%25a%0A%00%00%00%04gAMA%00%00%D6%D8%D4OX2%00%00%00%19tEXtSoftware%00Adobe%20ImageReadyq%C9e%3C%00%00%04%F8IDATx%DA%EC%DD%D1n%E2%3A%00E%D1%80%F8%FF%EF%E2%AF2%95%D0D4%0E%C1%14%B0%8Fa-%E9%3E%CC%9C%87n%B9%81%A6W0%1C%A6i%9A%E7y%0As8%1CT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AATE9%FE%FCw%3E%9F%AF%2B%2F%BA%97%FDT%1D~K(%5C%9D%D5%EA%1B%5C%86%B5%A9%BDU%B5y%80%ED%AB*%03%FAV9%AB%E1%CEj%E7%82%EF%FB%18%BC%AEJ8%AB%FA'%D2%BEU9%D7U%ECc0%E1%A2r%5DynwVi%CFW%7F%BB%17%7Dy%EACU%CD%0E%F0%FA%3BX%FEbV%FEM%9B%2B%AD%BE%AA%E5%95v%AB%AA%E3E5%DCu%15rV9%07%B5%7F%B5w%FCm%BA%BE%AA%FBY%3D%14%F0%EE%C7%60%0EU%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5JU%88%D3%F5%1F%AE%DF%3B%1B%F2%3E%DAUCNa%F92%D02%AC%7Dm%F9%3A%D4%F2%8B6%AE*%BF%5C%C2Ym~9g5%D0Y%95%17%7C%C8c%B0%7C%18%26%9CU%CD%13i%F7%AA%90%B3Z%7D%95%B4%C7%60%E6E%B5%BC%05%B4%FBY%95U%9E%DB%FD%1C%FC%E0%9F%83%7F%BE%17%7DkjMU%E3%03%AC%7CWj%DF%83%9An%BCG%AE%F1%95%96yQ%0Dq%5Dy%00%3Et%B5'%FC6%5DS%95pV%95%01%81%FF'%07%00%00%00%00%00%00%00%00%00%F8x%C7%F0%BE%9COp%5D%C9%7C%AD%E7%E6%EBV%FB%1E%E0(%07%E5%AC%C6%3A%ABi%9C%8F%C6%0E9%AB%C0'%D2%8E%9F%F99%D0E%B5%99%14%F5%0D%CD%7F%24%C6%DEH%B8%E9rV%DFs%DB%D0%F7%00k%FE%1D%84%84%83J%B8%E3%BA%FB%EF%20%84%1C%D7%AD%B0%8E%D7U%C8Y%05%1E%D4t%EF%AD%95Q%BF8w%BF%E9%0A%BF%EB%03%00%00%00%00%00%00%00%00%00%B8vJ%8E%BB%F5%B1u%8Cx%80%E1o%5E%CA9%AB%CB%CB%8E%03%DF%1D%B7T%25%9C%D5(%EFJM8%AB%CC'%D2%B2*%A4s%E7c6%FB%3E%FA%A2%1E%80~%0E%3E%DA%10x%5D%95Uig%15u%15%ED%7C%14%B6%87%A1%3B%FCo8%A8%D8o%D3%ADO%01%EDx%83%1A~%1B%9FpP%A3%DC%C6'%9C%95gK%00%00%00%00%00%00%00%00%00%20%D9%C9%11%D0%C0%40%AF%3F%EE%EE%92%94%D6%16X%B5%BCMH%15%2F%BF%D4%A7%C87%F1%8E%F2%81%AE%AAvzr%DA2%ABV%17%7C%E63%83%E7I%DC%C6%0Bs%1B%EF6%1E%00%00%00%00%00%00%00%00%00%80cr%9CW%FF%7F%C6%01%0E%F1%CE%A5%84%B3%CA%BC%E0%CB%AA%84%CE%F9%BF)%EC%13%08WU%AE%AB%B1%AE%2BO%EC%8E%CBYe%FE%8CN%ABr%5Dy%60~%CFA%0D%F4%AE%D4%BE%C75%CA%EDVB%EA(%B7%F1%09g%E5%D9%12%00%00%00%00%00%00%00%00%00H%F6%EB%13S%E7y%5E%5E%FB%98%F0%22%D1%B2'%A7%F0%92%B1%BC%24z3%AC%7Dm%60%D5%92%B4%7CEUO%5E%F0%AA*%3BU%B9%AE%3E%A0j%94%07%A0%C7%A0%AB%FD%B5%3F%A0%F7%03T%3Dy%D7%F7%D6%D4%C0%AAU%D2%E6%DFt%3F%A8%CC%AA%F2%86%B9%D7%F5%1F%18%E6%01%F8%CC%D5%9E%F0%F3z%88%AA%90%EF%20%00%00%00%00%00%00%00%00%00%C0%A6%D3%EA%CFi%AFb%2C%7BB%0A%2B%C3%1A%D7%06V%D5%07%A8r%5D%3D%D9%A6%CAu%F5%25%CF%A2%99%97zNX%60%95%AB%5DUZ%D5%FBR%03%AB%1C%D4k%9F%3F%BB%5C%FF%81a%AE%AB'%7F%F3%EA%FE%F3z%94%AA%D8%DF%5B%01%00%00%00%00%00%00%00%00%00%8E%FB%F3%F2%B1%1B%8DWU%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*UiU%C7%BBe%E7%F3%B9%CB%AAJ%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5*%AAj%FD%C6%D4%5Eo%90%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5%86%AF%1B%9F%98%DA%EBm%BBV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%AD%D6%E4%F58%01%00%00%00%00%00%00%00%00%00%00%00%00%00%40%85%7F%02%0C%008%C2%D0H%16j%8FX%00%00%00%00IEND%AEB%60%82") repeat-x !important;
    border-top: 1px solid #BBBBBB !important;
    border-right: 1px dashed #BBBBBB !important;
    border-bottom: 1px solid #000000 !important;
}

.firebugRulerV {
    top: 0 !important;
    left: -15px !important;
    width: 14px !important;
    height: 100% !important;
    background: url("data:image/png,%89PNG%0D%0A%1A%0A%00%00%00%0DIHDR%00%00%00%0E%00%00%13%88%08%02%00%00%00%0E%F5%CB%10%00%00%00%04gAMA%00%00%D6%D8%D4OX2%00%00%00%19tEXtSoftware%00Adobe%20ImageReadyq%C9e%3C%00%00%06~IDATx%DA%EC%DD%D1v%A20%14%40Qt%F1%FF%FF%E4%97%D9%07%3BT%19%92%DC%40(%90%EEy%9A5%CB%B6%E8%F6%9Ac%A4%CC0%84%FF%DC%9E%CF%E7%E3%F1%88%DE4%F8%5D%C7%9F%2F%BA%DD%5E%7FI%7D%F18%DDn%BA%C5%FB%DF%97%BFk%F2%10%FF%FD%B4%F2M%A7%FB%FD%FD%B3%22%07p%8F%3F%AE%E3%F4S%8A%8F%40%EEq%9D%BE8D%F0%0EY%A1Uq%B7%EA%1F%81%88V%E8X%3F%B4%CEy%B7h%D1%A2E%EBohU%FC%D9%AF2fO%8BBeD%BE%F7X%0C%97%A4%D6b7%2Ck%A5%12%E3%9B%60v%B7r%C7%1AI%8C%BD%2B%23r%00c0%B2v%9B%AD%CA%26%0C%1Ek%05A%FD%93%D0%2B%A1u%8B%16-%95q%5Ce%DCSO%8E%E4M%23%8B%F7%C2%FE%40%BB%BD%8C%FC%8A%B5V%EBu%40%F9%3B%A72%FA%AE%8C%D4%01%CC%B5%DA%13%9CB%AB%E2I%18%24%B0n%A9%0CZ*Ce%9C%A22%8E%D8NJ%1E%EB%FF%8F%AE%CAP%19*%C3%BAEKe%AC%D1%AAX%8C*%DEH%8F%C5W%A1e%AD%D4%B7%5C%5B%19%C5%DB%0D%EF%9F%19%1D%7B%5E%86%BD%0C%95%A12%AC%5B*%83%96%CAP%19%F62T%86%CAP%19*%83%96%CA%B8Xe%BC%FE)T%19%A1%17xg%7F%DA%CBP%19*%C3%BA%A52T%86%CAP%19%F62T%86%CA%B0n%A9%0CZ%1DV%C6%3D%F3%FCH%DE%B4%B8~%7F%5CZc%F1%D6%1F%AF%84%F9%0F6%E6%EBVt9%0E~%BEr%AF%23%B0%97%A12T%86%CAP%19%B4T%86%CA%B8Re%D8%CBP%19*%C3%BA%A52huX%19%AE%CA%E5%BC%0C%7B%19*CeX%B7h%A9%0C%95%E1%BC%0C%7B%19*CeX%B7T%06%AD%CB%5E%95%2B%BF.%8F%C5%97%D5%E4%7B%EE%82%D6%FB%CF-%9C%FD%B9%CF%3By%7B%19%F62T%86%CA%B0n%D1R%19*%A3%D3%CA%B0%97%A12T%86uKe%D0%EA%B02*%3F1%99%5DB%2B%A4%B5%F8%3A%7C%BA%2B%8Co%7D%5C%EDe%A8%0C%95a%DDR%19%B4T%C66%82fA%B2%ED%DA%9FC%FC%17GZ%06%C9%E1%B3%E5%2C%1A%9FoiB%EB%96%CA%A0%D5qe4%7B%7D%FD%85%F7%5B%ED_%E0s%07%F0k%951%ECr%0D%B5C%D7-g%D1%A8%0C%EB%96%CA%A0%A52T%C6)*%C3%5E%86%CAP%19%D6-%95A%EB*%95q%F8%BB%E3%F9%AB%F6%E21%ACZ%B7%22%B7%9B%3F%02%85%CB%A2%5B%B7%BA%5E%B7%9C%97%E1%BC%0C%EB%16-%95%A12z%AC%0C%BFc%A22T%86uKe%D0%EA%B02V%DD%AD%8A%2B%8CWhe%5E%AF%CF%F5%3B%26%CE%CBh%5C%19%CE%CB%B0%F3%A4%095%A1%CAP%19*Ce%A8%0C%3BO*Ce%A8%0C%95%A12%3A%AD%8C%0A%82%7B%F0v%1F%2FD%A9%5B%9F%EE%EA%26%AF%03%CA%DF9%7B%19*Ce%A8%0C%95%A12T%86%CA%B8Ze%D8%CBP%19*Ce%A8%0C%95%D1ae%EC%F7%89I%E1%B4%D7M%D7P%8BjU%5C%BB%3E%F2%20%D8%CBP%19*Ce%A8%0C%95%A12T%C6%D5*%C3%5E%86%CAP%19*Ce%B4O%07%7B%F0W%7Bw%1C%7C%1A%8C%B3%3B%D1%EE%AA%5C%D6-%EBV%83%80%5E%D0%CA%10%5CU%2BD%E07YU%86%CAP%19*%E3%9A%95%91%D9%A0%C8%AD%5B%EDv%9E%82%FFKOee%E4%8FUe%A8%0C%95%A12T%C6%1F%A9%8C%C8%3D%5B%A5%15%FD%14%22r%E7B%9F%17l%F8%BF%ED%EAf%2B%7F%CF%ECe%D8%CBP%19*Ce%A8%0C%95%E1%93~%7B%19%F62T%86%CAP%19*Ce%A8%0C%E7%13%DA%CBP%19*Ce%A8%0CZf%8B%16-Z%B4h%D1R%19f%8B%16-Z%B4h%D1R%19%B4%CC%16-Z%B4h%D1R%19%B4%CC%16-Z%B4h%D1%A2%A52%CC%16-Z%B4h%D1%A2%A52h%99-Z%B4h%D1%A2%A52h%99-Z%B4h%D1%A2EKe%98-Z%B4h%D1%A2EKe%D02%5B%B4h%D1%A2EKe%D02%5B%B4h%D1%A2E%8B%96%CA0%5B%B4h%D1%A2E%8B%96%CA%A0e%B6h%D1%A2E%8B%96%CA%A0e%B6h%D1%A2E%8B%16-%95a%B6h%D1%A2E%8B%16-%95A%CBl%D1%A2E%8B%16-%95A%CBl%D1%A2E%8B%16-Z*%C3l%D1%A2E%8B%16-Z*%83%96%D9%A2E%8B%16-Z*%83%96%D9%A2E%8B%16-Z%B4T%86%D9%A2E%8B%16-Z%B4T%06-%B3E%8B%16-Z%B4T%06-%B3E%8B%16-Z%B4h%A9%0C%B3E%8B%16-Z%B4h%A9%0CZf%8B%16-Z%B4h%A9%0CZf%8B%16-Z%B4h%D1R%19f%8B%16-Z%B4h%D1R%19%B4%CC%16-Z%B4h%D1R%19%B4%CC%16-Z%B4h%D1%A2%A52%CC%16-Z%B4h%D1%A2%A52h%99-Z%B4h%D1%A2%A52h%99-Z%B4h%D1%A2EKe%98-Z%B4h%D1%A2EKe%D02%5B%B4h%D1%A2EKe%D02%5B%B4h%D1%A2E%8B%96%CA0%5B%B4h%D1%A2E%8B%96%CA%A0e%B6h%D1%A2E%8B%96%CA%A0e%B6h%D1%A2E%8B%16-%95a%B6h%D1%A2E%8B%16-%95A%CBl%D1%A2E%8B%16-%95A%CBl%D1%A2E%8B%16-Z*%C3l%D1%A2E%8B%16-Z*%83%96%D9%A2E%8B%16-Z*%83%96%D9%A2E%8B%16-Z%B4T%86%D9%A2E%8B%16-Z%B4T%06-%B3E%8B%16-Z%B4T%06-%B3E%8B%16-Z%B4h%A9%0C%B3E%8B%16-Z%B4h%A9%0CZf%8B%16-Z%B4h%A9%0CZf%8B%16-Z%B4h%D1R%19f%8B%16-Z%B4h%D1R%19%B4%CC%16-Z%B4h%D1R%19%B4%CC%16-Z%B4h%D1%A2%A52%CC%16-Z%B4h%D1%A2%A52h%99-Z%B4h%D1%A2%A52h%99-Z%B4h%D1%A2EKe%98-Z%B4h%D1%A2EKe%D02%5B%B4h%D1%A2EKe%D02%5B%B4h%D1%A2E%8B%96%CA0%5B%B4h%D1%A2E%8B%96%CA%A0e%B6h%D1%A2E%8B%96%CA%A0e%B6h%D1%A2E%8B%16-%95a%B6h%D1%A2E%8B%16-%95A%CBl%D1%A2E%8B%16-%95A%CBl%D1%A2E%8B%16-Z*%C3l%D1%A2E%8B%16-Z*%83%96%D9%A2E%8B%16-Z*%83%96%D9%A2E%8B%16-Z%B4T%86%D9%A2E%8B%16-Z%B4T%06-%B3E%8B%16-Z%B4%AE%A4%F5%25%C0%00%DE%BF%5C'%0F%DA%B8q%00%00%00%00IEND%AEB%60%82") repeat-y !important;
    border-left: 1px solid #BBBBBB !important;
    border-right: 1px solid #000000 !important;
    border-bottom: 1px dashed #BBBBBB !important;
}

.overflowRulerX > .firebugRulerV {
    left: 0 !important;
}

.overflowRulerY > .firebugRulerH {
    top: 0 !important;
}

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
.fbProxyElement {
    position: fixed !important;
    pointer-events: auto !important;
}
</style><style type="text/css" charset="utf-8">/* See license.txt for terms of usage */
/** reset styling **/
.firebugResetStyles {
    z-index: 2147483646 !important;
    top: 0 !important;
    left: 0 !important;
    display: block !important;
    border: 0 none !important;
    margin: 0 !important;
    padding: 0 !important;
    outline: 0 !important;
    min-width: 0 !important;
    max-width: none !important;
    min-height: 0 !important;
    max-height: none !important;
    position: fixed !important;
    transform: rotate(0deg) !important;
    transform-origin: 50% 50% !important;
    border-radius: 0 !important;
    box-shadow: none !important;
    background: transparent none !important;
    pointer-events: none !important;
    white-space: normal !important;
}

.firebugBlockBackgroundColor {
    background-color: transparent !important;
}

.firebugResetStyles:before, .firebugResetStyles:after {
    content: "" !important;
}
/**actual styling to be modified by firebug theme**/
.firebugCanvas {
    display: none !important;
}

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
.firebugLayoutBox {
    width: auto !important;
    position: static !important;
}

.firebugLayoutBoxOffset {
    opacity: 0.8 !important;
    position: fixed !important;
}

.firebugLayoutLine {
    opacity: 0.4 !important;
    background-color: #000000 !important;
}

.firebugLayoutLineLeft, .firebugLayoutLineRight {
    width: 1px !important;
    height: 100% !important;
}

.firebugLayoutLineTop, .firebugLayoutLineBottom {
    width: 100% !important;
    height: 1px !important;
}

.firebugLayoutLineTop {
    margin-top: -1px !important;
    border-top: 1px solid #999999 !important;
}

.firebugLayoutLineRight {
    border-right: 1px solid #999999 !important;
}

.firebugLayoutLineBottom {
    border-bottom: 1px solid #999999 !important;
}

.firebugLayoutLineLeft {
    margin-left: -1px !important;
    border-left: 1px solid #999999 !important;
}

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
.firebugLayoutBoxParent {
    border-top: 0 none !important;
    border-right: 1px dashed #E00 !important;
    border-bottom: 1px dashed #E00 !important;
    border-left: 0 none !important;
    position: fixed !important;
    width: auto !important;
}

.firebugRuler{
    position: absolute !important;
}

.firebugRulerH {
    top: -15px !important;
    left: 0 !important;
    width: 100% !important;
    height: 14px !important;
    background: url("data:image/png,%89PNG%0D%0A%1A%0A%00%00%00%0DIHDR%00%00%13%88%00%00%00%0E%08%02%00%00%00L%25a%0A%00%00%00%04gAMA%00%00%D6%D8%D4OX2%00%00%00%19tEXtSoftware%00Adobe%20ImageReadyq%C9e%3C%00%00%04%F8IDATx%DA%EC%DD%D1n%E2%3A%00E%D1%80%F8%FF%EF%E2%AF2%95%D0D4%0E%C1%14%B0%8Fa-%E9%3E%CC%9C%87n%B9%81%A6W0%1C%A6i%9A%E7y%0As8%1CT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AATE9%FE%FCw%3E%9F%AF%2B%2F%BA%97%FDT%1D~K(%5C%9D%D5%EA%1B%5C%86%B5%A9%BDU%B5y%80%ED%AB*%03%FAV9%AB%E1%CEj%E7%82%EF%FB%18%BC%AEJ8%AB%FA'%D2%BEU9%D7U%ECc0%E1%A2r%5DynwVi%CFW%7F%BB%17%7Dy%EACU%CD%0E%F0%FA%3BX%FEbV%FEM%9B%2B%AD%BE%AA%E5%95v%AB%AA%E3E5%DCu%15rV9%07%B5%7F%B5w%FCm%BA%BE%AA%FBY%3D%14%F0%EE%C7%60%0EU%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5JU%88%D3%F5%1F%AE%DF%3B%1B%F2%3E%DAUCNa%F92%D02%AC%7Dm%F9%3A%D4%F2%8B6%AE*%BF%5C%C2Ym~9g5%D0Y%95%17%7C%C8c%B0%7C%18%26%9CU%CD%13i%F7%AA%90%B3Z%7D%95%B4%C7%60%E6E%B5%BC%05%B4%FBY%95U%9E%DB%FD%1C%FC%E0%9F%83%7F%BE%17%7DkjMU%E3%03%AC%7CWj%DF%83%9An%BCG%AE%F1%95%96yQ%0Dq%5Dy%00%3Et%B5'%FC6%5DS%95pV%95%01%81%FF'%07%00%00%00%00%00%00%00%00%00%F8x%C7%F0%BE%9COp%5D%C9%7C%AD%E7%E6%EBV%FB%1E%E0(%07%E5%AC%C6%3A%ABi%9C%8F%C6%0E9%AB%C0'%D2%8E%9F%F99%D0E%B5%99%14%F5%0D%CD%7F%24%C6%DEH%B8%E9rV%DFs%DB%D0%F7%00k%FE%1D%84%84%83J%B8%E3%BA%FB%EF%20%84%1C%D7%AD%B0%8E%D7U%C8Y%05%1E%D4t%EF%AD%95Q%BF8w%BF%E9%0A%BF%EB%03%00%00%00%00%00%00%00%00%00%B8vJ%8E%BB%F5%B1u%8Cx%80%E1o%5E%CA9%AB%CB%CB%8E%03%DF%1D%B7T%25%9C%D5(%EFJM8%AB%CC'%D2%B2*%A4s%E7c6%FB%3E%FA%A2%1E%80~%0E%3E%DA%10x%5D%95Uig%15u%15%ED%7C%14%B6%87%A1%3B%FCo8%A8%D8o%D3%ADO%01%EDx%83%1A~%1B%9FpP%A3%DC%C6'%9C%95gK%00%00%00%00%00%00%00%00%00%20%D9%C9%11%D0%C0%40%AF%3F%EE%EE%92%94%D6%16X%B5%BCMH%15%2F%BF%D4%A7%C87%F1%8E%F2%81%AE%AAvzr%DA2%ABV%17%7C%E63%83%E7I%DC%C6%0Bs%1B%EF6%1E%00%00%00%00%00%00%00%00%00%80cr%9CW%FF%7F%C6%01%0E%F1%CE%A5%84%B3%CA%BC%E0%CB%AA%84%CE%F9%BF)%EC%13%08WU%AE%AB%B1%AE%2BO%EC%8E%CBYe%FE%8CN%ABr%5Dy%60~%CFA%0D%F4%AE%D4%BE%C75%CA%EDVB%EA(%B7%F1%09g%E5%D9%12%00%00%00%00%00%00%00%00%00H%F6%EB%13S%E7y%5E%5E%FB%98%F0%22%D1%B2'%A7%F0%92%B1%BC%24z3%AC%7Dm%60%D5%92%B4%7CEUO%5E%F0%AA*%3BU%B9%AE%3E%A0j%94%07%A0%C7%A0%AB%FD%B5%3F%A0%F7%03T%3Dy%D7%F7%D6%D4%C0%AAU%D2%E6%DFt%3F%A8%CC%AA%F2%86%B9%D7%F5%1F%18%E6%01%F8%CC%D5%9E%F0%F3z%88%AA%90%EF%20%00%00%00%00%00%00%00%00%00%C0%A6%D3%EA%CFi%AFb%2C%7BB%0A%2B%C3%1A%D7%06V%D5%07%A8r%5D%3D%D9%A6%CAu%F5%25%CF%A2%99%97zNX%60%95%AB%5DUZ%D5%FBR%03%AB%1C%D4k%9F%3F%BB%5C%FF%81a%AE%AB'%7F%F3%EA%FE%F3z%94%AA%D8%DF%5B%01%00%00%00%00%00%00%00%00%00%8E%FB%F3%F2%B1%1B%8DWU%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*UiU%C7%BBe%E7%F3%B9%CB%AAJ%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5*%AAj%FD%C6%D4%5Eo%90%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5%86%AF%1B%9F%98%DA%EBm%BBV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%AD%D6%E4%F58%01%00%00%00%00%00%00%00%00%00%00%00%00%00%40%85%7F%02%0C%008%C2%D0H%16j%8FX%00%00%00%00IEND%AEB%60%82") repeat-x !important;
    border-top: 1px solid #BBBBBB !important;
    border-right: 1px dashed #BBBBBB !important;
    border-bottom: 1px solid #000000 !important;
}

.firebugRulerV {
    top: 0 !important;
    left: -15px !important;
    width: 14px !important;
    height: 100% !important;
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</style></head>

<body id="type-a" class="noToggleCheck ">
<div id="wrap">
			

        <div id="content-wrap">

                
                
                

                <!-- CDD info for old design -->
                
                
                


                				
				

                <div id="content">                              		
                                
                <!--<ul id="msg" class="msg"><li class="info"><p class=""></p><p class=""></p><p class=""></p></li></ul>-->
                                
                

	



                
                <!-- Reformat and downlaod for new design -->
                 <!-- aria -->
                 <!-- aria -->                
                <form action="Blast.cgi" enctype="application/x-www-form-urlencoded" method="POST" name="overview0">
                
                
                
<div id="page">

<div id="summary" class="">

<h1>Nucleotide Sequence (16 letters) </h1>

<div id="summarylists">
<dl>
<dt>RID</dt>
<dd>
<a title="BLAST search request ID" href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&amp;RID=PHWP1JNZ014" target="lnkPHWP1JNZ014">PHWP1JNZ014</a> (Expires on 05-07 22:33 pm)
</dd>
</dl>
<div id="querysummary">
<dl>
<dt>Query ID</dt>
<dd class="hidden">
<a title="Find query in Entrez" href="http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Search&amp;db=nucleotide&amp;term=59987&amp;dopt=GenBank" target="lnkPHWP1JNZ014">lcl|59987</a>
</dd>
<dd class="">lcl|59987</dd>
<dt>Description</dt>
<dd>None</dd>
<dt>Molecule type</dt>
<dd>nucleic acid</dd>
<dt>Query Length</dt>
<dd>16</dd>
</dl>
</div><!--/#querysummary-->

<div id="dbsummary">
<dl>
<dt>   </dt><dd>   </dd>
<dt>Database Name</dt>
<dd>pdb</dd>
<dt>Description</dt>
<dd>PDB nucleotide database <a aria-expanded="false" role="button" aria-disabled="false" href="#" title="See multiple databases detailed information" class="jtg resArrowLinkB hidden  jig-ncbitoggler ui-ncbitoggler ui-widget" data-ncbitoggler-toggles="dbDetails" id="showDetails"><span class="ui-ncbitoggler-master-text">See details</span><span class="ui-icon ui-icon-triangle-1-e"></span></a></dd> <!-- -- Database or subject info ---->
<dt class="xgl">Program</dt>
<dd class="xgl">BLASTN 2.2.29+ <a aria-expanded="false" role="button" aria-disabled="false" href="#" title="How to cite BLAST in publications" class="resArrowLinkB hidden shown jig-ncbitoggler ui-ncbitoggler jtg ui-widget" data-ncbitoggler-toggles="refInfo" id="showRefs"><span class="ui-ncbitoggler-master-text">Citation</span><span class="ui-icon ui-icon-triangle-1-e"></span></a></dd>
</dl>
</div><!--/#dbsummary-->
</div><!--/#summarylists -->

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 <!-- aria end -->
</div><!--/#summary-->
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<div id="grView" class="hidden shown">
<h2 class="resArr">
<a aria-expanded="true" role="button" aria-disabled="false" href="#" id="showGraphic" class="jig-ncbitoggler-open ui-ncbitoggler-open ui-widget" data-jigconfig="indicator: 'plus-minus-big'" data-ncbitoggler-toggles="graphicInfo" title="Show/hide Graphic Summary">
<span class="ui-ncbitoggler-master-text">Graphic Summary</span>
<span class="ui-icon ui-icon-plus-minus-big-open"></span>
</a>
</h2>
<div class="ui-helper-reset" aria-live="assertive">
<div aria-hidden="false" id="graphicInfo" class="resBox ui-ncbitoggler-slave-open ui-widget ui-ncbitoggler">


<div id="graphic" class="hidden shown">
<h3>Distribution of 45 Blast Hits on the Query Sequence
<a aria-expanded="false" role="button" aria-disabled="false" class="helplink jig-ncbitoggler ui-ncbitoggler ui-widget" title="Graphic summary help" id="grHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span>
<span class="ui-icon ui-icon-triangle-1-e"></span></a></h3>
<div class="ui-helper-reset" aria-live="assertive">
</div>
<center><input name="defline" size="85" value="Mouse-over to show defline and scores, click to show alignments" type="text"><table bordercolordark="#0000FF" bordercolorlight="#0000FF" border="1" cellpadding="10" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><table border="0" cellpadding="0" cellspacing="1"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/score.gif" height="40" width="500"></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="1"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/query_no_scale.gif" height="10" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="51"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/scale.gif" height="10" width="2"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="91"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/scale.gif" height="10" width="2"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="91"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/scale.gif" height="10" width="2"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="91"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/scale.gif" height="10" width="2"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="91"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/scale.gif" height="10" width="2"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="91"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/scale.gif" height="10" width="2"></td>
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<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/1.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="83"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/3.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="83"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/6.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="83"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/9.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="73"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/1.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/2.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="73"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/1.gif" height="13" width="10"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/5.gif" height="13" width="10"></td>
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<br><table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><a href="#557804451" onclick='DisplayAlignFromGraphics("557804451",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J5A_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td>
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<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
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<td align="LEFT" valign="CENTER"><a href="#557804395" onclick='DisplayAlignFromGraphics("557804395",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J58_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td>
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<td align="LEFT" valign="CENTER"><a href="#557804339" onclick='DisplayAlignFromGraphics("557804339",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J56_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td>
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<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
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</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><a href="#557804195" onclick='DisplayAlignFromGraphics("557804195",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J51_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><a href="#557804163" onclick='DisplayAlignFromGraphics("557804163",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J50_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><a href="#557804083" onclick='DisplayAlignFromGraphics("557804083",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J4X_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><a href="#485601478" onclick='DisplayAlignFromGraphics("485601478",event)'><img alt="score 16" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J3F_5 Chain 5, Structure Of The H. Sapiens 60s Rrna S=16 E=47'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="250"></a></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="6" width="1"></td>
<td align="LEFT" valign="CENTER"><a href="#485601478" onclick='DisplayAlignFromGraphics("485601478",event)'><img alt="score 18" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J3F_5 Chain 5, Structure Of The H. Sapiens 60s Rrna S=18 E=12'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="124"></a></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="6" width="1"></td>
<td align="LEFT" valign="CENTER"><a href="#485601478" onclick='DisplayAlignFromGraphics("485601478",event)'><img alt="score 16" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J3F_5 Chain 5, Structure Of The H. Sapiens 60s Rrna S=16 E=47'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="124"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><a href="#485601474" onclick='DisplayAlignFromGraphics("485601474",event)'><img alt="score 14" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J3E_5 Chain 5, Structure Of The D. Melanogaster 60s Rrna S=14 E=1.9e+02'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="219"></a></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="6" width="1"></td>
<td align="LEFT" valign="CENTER"><a href="#485601474" onclick='DisplayAlignFromGraphics("485601474",event)'><img alt="score 18" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J3E_5 Chain 5, Structure Of The D. Melanogaster 60s Rrna S=18 E=12'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="155"></a></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="6" width="1"></td>
<td align="LEFT" valign="CENTER"><a href="#485601474" onclick='DisplayAlignFromGraphics("485601474",event)'><img alt="score 16" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J3E_5 Chain 5, Structure Of The D. Melanogaster 60s Rrna S=16 E=47'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="124"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="94"></td>
<td align="LEFT" valign="CENTER"><a href="#357380483" onclick='DisplayAlignFromGraphics("357380483",event)'><img alt="score 18" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J0O_8 Chain 8, Core Of Mammalian 80s Pre-Ribosome In Complex .. S=18 E=12'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="281"></a></td>
</tr></tbody></table>
<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
</td></tr></tbody></table>
</center><hr>
</div><!--/#graphic-->
</div><!-- graphicInfo -->
</div><!-- ARIA -->
</div>
<!--HITMATRIX_VIEW - only for bl2seq -->

<div id="dscrView" class="hidden shown">
<h2 class="resArr">
<a aria-expanded="true" role="button" aria-disabled="false" href="#" id="showDescr" class="jig-ncbitoggler-open ui-ncbitoggler-open ui-widget" data-jigconfig="indicator: 'plus-minus-big'" data-ncbitoggler-toggles="descrInfo" title="Show/hide Descriptions">
<span class="ui-ncbitoggler-master-text">Descriptions</span>
<span class="ui-icon ui-icon-plus-minus-big-open"></span>
</a>
</h2>
<div class="ui-helper-reset" aria-live="assertive">
<div aria-hidden="false" id="descrInfo" class="resBox ui-ncbitoggler-slave-open ui-widget ui-ncbitoggler">
 <!-- legend to links to other resources -->


<div id="descriptions" class="blRes">
<!--<pre> -->
<div class="cap">Sequences producing significant alignments:</div>
<a id="shcl" href="#" onclick="showAllCol(event,this)" class="shcl hidden">
Show all columns <span class="accsb"> of the table presenting sequences producing significant alignments </span>
</a>
<span id="cntDesc">
<span>Select:<a href="#" id="cntSelA" sel="all">All</a><a href="#" id="cntSelN" sel="n">None</a></span>
<span>Selected:<span id="slcNum">0</span></span>
</span>

<div id="descTblCtrl" class="cnf">
<a href="#alignInfo" id="alnNav" class="toolsCtr alnNav" title="Go to alignments"><span>Alignments</span></a>
<a aria-haspopup="true" aria-expanded="false" role="button" href="#dsDownload" minslct="1" class="jig-ncbipopper toolsCtr dnld dialog " data-jigconfig="hasArrow:'true',arrowDirection:'top'" id="dscDwnld" disabled="disabled" title="Download information for selected sequences"><span>Download</span></a>






<a href="#" class="toolsCtr" minslct="1" view="dflt" frm="submitterTop" seqlist="selSeqs" title="See genbank report for selected sequences" disabled="disabled">GenBank</a> <!-- genbank or Traces -->
<a href="#" class="toolsCtr " minslct="1" view="graph" title="See graphic representation for selected sequences" disabled="disabled">Graphics</a>
<a href="#" class="toolsCtr hidden shown" view="tree" minslct="1" frm="sbmtTreeView" seqlist="selSeqsTr" disabled="disabled" title="See a distance tree of pairwise comparisons for the selected sequences">Distance tree of results</a>


<a aria-haspopup="true" aria-expanded="false" role="button" class="jig-ncbipopper button_config" title="Show/hide columns" id="button_config" href="#dsConfig"><span class="accsb">Show/hide columns of the table presenting sequences producing significant alignments </span></a>

 <!-- dsConfig -->       


</div>
<div class="ui-ncbigrid-outer-div caption-exists">
<div class="ui-ncbigrid-inner-div">
<table id="dscTable" class="jig-ncbigrid  ui-ncbigrid" data-jigconfig="" cellpadding="0" cellspacing="0">
<caption class="hdnHeader">Sequences producing significant alignments:</caption>  
<thead>
<tr class="first">  
  <th class="c0" id="c0"><span>Select for downloading or viewing reports</span></th>  
  <th class="dflnDth c2" id="c2">Description</th>
  <th class=" c3" id="c3">

  <a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&amp;ALIGNMENTS=100&amp;ALIGNMENT_VIEW=Pairwise&amp;DATABASE_SORT=0&amp;DESCRIPTIONS=100&amp;DYNAMIC_FORMAT=on&amp;FIRST_QUERY_NUM=0&amp;FORMAT_OBJECT=Alignment&amp;FORMAT_PAGE_TARGET=&amp;FORMAT_TYPE=HTML&amp;GET_SEQUENCE=yes&amp;I_THRESH=&amp;LINE_LENGTH=60&amp;MASK_CHAR=2&amp;MASK_COLOR=1&amp;NUM_OVERVIEW=100&amp;OLD_BLAST=false&amp;PAGE=Nucleotides&amp;QUERY_INDEX=0&amp;QUERY_NUMBER=0&amp;RESULTS_PAGE_TARGET=&amp;RID=PHWP1JNZ014&amp;SHOW_LINKOUT=yes&amp;SHOW_OVERVIEW=yes&amp;STEP_NUMBER=&amp;WORD_SIZE=7&amp;OLD_VIEW=false&amp;DISPLAY_SORT=1&amp;HSP_SORT=1" class="dcs" title="Sort by max score">Max score</a>
  </th>
  <th class=" c4" id="c4">
  <a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&amp;ALIGNMENTS=100&amp;ALIGNMENT_VIEW=Pairwise&amp;DATABASE_SORT=0&amp;DESCRIPTIONS=100&amp;DYNAMIC_FORMAT=on&amp;FIRST_QUERY_NUM=0&amp;FORMAT_OBJECT=Alignment&amp;FORMAT_PAGE_TARGET=&amp;FORMAT_TYPE=HTML&amp;GET_SEQUENCE=yes&amp;I_THRESH=&amp;LINE_LENGTH=60&amp;MASK_CHAR=2&amp;MASK_COLOR=1&amp;NUM_OVERVIEW=100&amp;OLD_BLAST=false&amp;PAGE=Nucleotides&amp;QUERY_INDEX=0&amp;QUERY_NUMBER=0&amp;RESULTS_PAGE_TARGET=&amp;RID=PHWP1JNZ014&amp;SHOW_LINKOUT=yes&amp;SHOW_OVERVIEW=yes&amp;STEP_NUMBER=&amp;WORD_SIZE=7&amp;OLD_VIEW=false&amp;DISPLAY_SORT=2&amp;HSP_SORT=1" class="dcs" title="Sort by total score">Total score</a>
  </th>
  <th class=" c5" id="c5">
  <a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&amp;ALIGNMENTS=100&amp;ALIGNMENT_VIEW=Pairwise&amp;DATABASE_SORT=0&amp;DESCRIPTIONS=100&amp;DYNAMIC_FORMAT=on&amp;FIRST_QUERY_NUM=0&amp;FORMAT_OBJECT=Alignment&amp;FORMAT_PAGE_TARGET=&amp;FORMAT_TYPE=HTML&amp;GET_SEQUENCE=yes&amp;I_THRESH=&amp;LINE_LENGTH=60&amp;MASK_CHAR=2&amp;MASK_COLOR=1&amp;NUM_OVERVIEW=100&amp;OLD_BLAST=false&amp;PAGE=Nucleotides&amp;QUERY_INDEX=0&amp;QUERY_NUMBER=0&amp;RESULTS_PAGE_TARGET=&amp;RID=PHWP1JNZ014&amp;SHOW_LINKOUT=yes&amp;SHOW_OVERVIEW=yes&amp;STEP_NUMBER=&amp;WORD_SIZE=7&amp;OLD_VIEW=false&amp;DISPLAY_SORT=4&amp;HSP_SORT=0" class="dcs" title="Sort by query coverage">Query cover</a>
  </th>
  <th class="sel c6" id="c6">
  <a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&amp;ALIGNMENTS=100&amp;ALIGNMENT_VIEW=Pairwise&amp;DATABASE_SORT=0&amp;DESCRIPTIONS=100&amp;DYNAMIC_FORMAT=on&amp;FIRST_QUERY_NUM=0&amp;FORMAT_OBJECT=Alignment&amp;FORMAT_PAGE_TARGET=&amp;FORMAT_TYPE=HTML&amp;GET_SEQUENCE=yes&amp;I_THRESH=&amp;LINE_LENGTH=60&amp;MASK_CHAR=2&amp;MASK_COLOR=1&amp;NUM_OVERVIEW=100&amp;OLD_BLAST=false&amp;PAGE=Nucleotides&amp;QUERY_INDEX=0&amp;QUERY_NUMBER=0&amp;RESULTS_PAGE_TARGET=&amp;RID=PHWP1JNZ014&amp;SHOW_LINKOUT=yes&amp;SHOW_OVERVIEW=yes&amp;STEP_NUMBER=&amp;WORD_SIZE=7&amp;OLD_VIEW=false&amp;DISPLAY_SORT=0&amp;HSP_SORT=0" class="dcs" title="Sort by E value">E value</a>
  </th>
  <th class="c7" id="c7">
<a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&amp;ALIGNMENTS=100&amp;ALIGNMENT_VIEW=Pairwise&amp;DATABASE_SORT=0&amp;DESCRIPTIONS=100&amp;DYNAMIC_FORMAT=on&amp;FIRST_QUERY_NUM=0&amp;FORMAT_OBJECT=Alignment&amp;FORMAT_PAGE_TARGET=&amp;FORMAT_TYPE=HTML&amp;GET_SEQUENCE=yes&amp;I_THRESH=&amp;LINE_LENGTH=60&amp;MASK_CHAR=2&amp;MASK_COLOR=1&amp;NUM_OVERVIEW=100&amp;OLD_BLAST=false&amp;PAGE=Nucleotides&amp;QUERY_INDEX=0&amp;QUERY_NUMBER=0&amp;RESULTS_PAGE_TARGET=&amp;RID=PHWP1JNZ014&amp;SHOW_LINKOUT=yes&amp;SHOW_OVERVIEW=yes&amp;STEP_NUMBER=&amp;WORD_SIZE=7&amp;DISPLAY_SORT=3&amp;HSP_SORT=3" class="dcs" title="Sort by ident">Ident</a>
</th>
                
  <th class="c1" id="c8">Accession</th>
</tr>
</thead>
<tbody>
<tr id="dtr_557804451" ind="1" class="odd dflLnk">
<td class="l c0"><span class="ind">1</span><input id="chk_1" class="cb" name="getSeqGi" value="557804451" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_1" class="accsb">Select seq pdb|3J5A|A</label></td>
<td class="lim l c2">
<div class="lim n">
<a stat="disp" title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Post- Translocation State (post1, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="1" accs="pdb|3J5A|A" seqfsta="gi|557804451" gi="557804451" seqid="557804451" id="deflnDesc_1" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804451">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Post- Translocation State (post1, 50s Subunit)</a>
</div>
</td>
<td class="c3">32.2</td>
<td class="c4">77.3</td>
<td class="c5">100%</td>
<td class="c6">8e-04</td><td class="c7">100%</td>
<td class="c1 l lim">
<a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&amp;log$=nucltop&amp;blast_rank=1&amp;RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J5A_A">3J5A_A</a>
</td>
</tr><tr id="dtr_557804395" ind="2" class="even dflLnk">
<td class="l c0"><span class="ind">2</span><input id="chk_2" class="cb" name="getSeqGi" value="557804395" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_2" class="accsb">Select seq pdb|3J58|A</label></td>
<td class="lim l c2">
<div class="lim n">
<a stat="disp" title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5b, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="2" accs="pdb|3J58|A" seqfsta="gi|557804395" gi="557804395" seqid="557804395" id="deflnDesc_2" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804395">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5b, 50s Subunit)</a>
</div>
</td>
<td class="c3">32.2</td>
<td class="c4">77.3</td>
<td class="c5">100%</td>
<td class="c6">8e-04</td><td class="c7">100%</td>
<td class="c1 l lim">
<a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&amp;log$=nucltop&amp;blast_rank=2&amp;RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J58_A">3J58_A</a>
</td>
</tr><tr id="dtr_557804339" ind="3" class="odd dflLnk">
<td class="l c0"><span class="ind">3</span><input id="chk_3" class="cb" name="getSeqGi" value="557804339" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_3" class="accsb">Select seq pdb|3J56|A</label></td>
<td class="lim l c2">
<div class="lim n">
<a stat="disp" title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5a, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="3" accs="pdb|3J56|A" seqfsta="gi|557804339" gi="557804339" seqid="557804339" id="deflnDesc_3" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804339">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5a, 50s Subunit)</a>
</div>
</td>
<td class="c3">32.2</td>
<td class="c4">77.3</td>
<td class="c5">100%</td>
<td class="c6">8e-04</td><td class="c7">100%</td>
<td class="c1 l lim">
<a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&amp;log$=nucltop&amp;blast_rank=3&amp;RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J56_A">3J56_A</a>
</td>
</tr><tr id="dtr_557804283" ind="4" class="even dflLnk">
<td class="l c0"><span class="ind">4</span><input id="chk_4" class="cb" name="getSeqGi" value="557804283" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_4" class="accsb">Select seq pdb|3J54|A</label></td>
<td class="lim l c2">
<div class="lim n">
<a stat="disp" title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre4, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="4" accs="pdb|3J54|A" seqfsta="gi|557804283" gi="557804283" seqid="557804283" id="deflnDesc_4" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804283">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre4, 50s Subunit)</a>
</div>
</td>
<td class="c3">32.2</td>
<td class="c4">77.3</td>
<td class="c5">100%</td>
<td class="c6">8e-04</td><td class="c7">100%</td>
<td class="c1 l lim">
<a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&amp;log$=nucltop&amp;blast_rank=4&amp;RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J54_A">3J54_A</a>
</td>
</tr><tr id="dtr_557804227" ind="5" class="odd dflLnk">
<td class="l c0"><span class="ind">5</span><input id="chk_5" class="cb" name="getSeqGi" value="557804227" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_5" class="accsb">Select seq pdb|3J52|A</label></td>
<td class="lim l c2">
<div class="lim n">
<a stat="disp" title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1a, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="5" accs="pdb|3J52|A" seqfsta="gi|557804227" gi="557804227" seqid="557804227" id="deflnDesc_5" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804227">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1a, 50s Subunit)</a>
</div>
</td>
<td class="c3">32.2</td>
<td class="c4">77.3</td>
<td class="c5">100%</td>
<td class="c6">8e-04</td><td class="c7">100%</td>
<td class="c1 l lim">
<a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&amp;log$=nucltop&amp;blast_rank=5&amp;RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J52_A">3J52_A</a>
</td>
</tr><tr id="dtr_557804195" ind="6" class="even dflLnk">
<td class="l c0"><span class="ind">6</span><input id="chk_6" class="cb" name="getSeqGi" value="557804195" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_6" class="accsb">Select seq pdb|3J51|A</label></td>
<td class="lim l c2">
<div class="lim n">
<a title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre3, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="6" accs="pdb|3J51|A" seqfsta="gi|557804195" gi="557804195" seqid="557804195" id="deflnDesc_6" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804195">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre3, 50s Subunit)</a>
</div>
</td>
<td class="c3">32.2</td>
<td class="c4">77.3</td>
<td class="c5">100%</td>
<td class="c6">8e-04</td><td class="c7">100%</td>
<td class="c1 l lim">
<a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804195?report=genbank&amp;log$=nucltop&amp;blast_rank=6&amp;RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J51_A">3J51_A</a>
</td>
</tr><tr id="dtr_557804163" ind="7" class="odd dflLnk">
<td class="l c0"><span class="ind">7</span><input id="chk_7" class="cb" name="getSeqGi" value="557804163" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_7" class="accsb">Select seq pdb|3J50|A</label></td>
<td class="lim l c2">
<div class="lim n">
<a title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre2, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="7" accs="pdb|3J50|A" seqfsta="gi|557804163" gi="557804163" seqid="557804163" id="deflnDesc_7" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804163">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre2, 50s Subunit)</a>
</div>
</td>
<td class="c3">32.2</td>
<td class="c4">77.3</td>
<td class="c5">100%</td>
<td class="c6">8e-04</td><td class="c7">100%</td>
<td class="c1 l lim">
<a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804163?report=genbank&amp;log$=nucltop&amp;blast_rank=7&amp;RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J50_A">3J50_A</a>
</td>
</tr><tr id="dtr_557804083" ind="8" class="even dflLnk">
<td class="l c0"><span class="ind">8</span><input id="chk_8" class="cb" name="getSeqGi" value="557804083" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_8" class="accsb">Select seq pdb|3J4X|A</label></td>
<td class="lim l c2">
<div class="lim n">
<a title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1b, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="8" accs="pdb|3J4X|A" seqfsta="gi|557804083" gi="557804083" seqid="557804083" id="deflnDesc_8" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804083">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1b, 50s Subunit)</a>
</div>
</td>
<td class="c3">32.2</td>
<td class="c4">77.3</td>
<td class="c5">100%</td>
<td class="c6">8e-04</td><td class="c7">100%</td>
<td class="c1 l lim">
<a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804083?report=genbank&amp;log$=nucltop&amp;blast_rank=8&amp;RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J4X_A">3J4X_A</a>
</td>
</tr><tr id="dtr_485601478" ind="9" class="odd dflLnk">
<td class="l c0"><span class="ind">9</span><input id="chk_9" class="cb" name="getSeqGi" value="485601478" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_9" class="accsb">Select seq pdb|3J3F|5</label></td>
<td class="lim l c2">
<div class="lim n">
<a title="Go to alignment for Chain 5, Structure Of The H. Sapiens 60s Rrna" class="deflnDesc" hsp="8" len="63" ind="9" accs="pdb|3J3F|5" seqfsta="gi|485601478" gi="485601478" seqid="485601478" id="deflnDesc_9" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_485601478">Chain 5, Structure Of The H. Sapiens 60s Rrna</a>
</div>
</td>
<td class="c3">18.3</td>
<td class="c4">  128</td>
<td class="c5">100%</td>
<td class="c6">   12</td><td class="c7">100%</td>
<td class="c1 l lim">
<a href="http://www.ncbi.nlm.nih.gov/nucleotide/485601478?report=genbank&amp;log$=nucltop&amp;blast_rank=9&amp;RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J3F_5">3J3F_5</a>
</td>
</tr><tr id="dtr_485601474" ind="10" class="even dflLnk">
<td class="l c0"><span class="ind">10</span><input id="chk_10" class="cb" name="getSeqGi" value="485601474" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_10" class="accsb">Select seq pdb|3J3E|5</label></td>
<td class="lim l c2">
<div class="lim n">
<a title="Go to alignment for Chain 5, Structure Of The D. Melanogaster 60s Rrna" class="deflnDesc" hsp="4" len="31" ind="10" accs="pdb|3J3E|5" seqfsta="gi|485601474" gi="485601474" seqid="485601474" id="deflnDesc_10" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_485601474">Chain 5, Structure Of The D. Melanogaster 60s Rrna</a>
</div>
</td>
<td class="c3">18.3</td>
<td class="c4">63.4</td>
<td class="c5">100%</td>
<td class="c6">   12</td><td class="c7">100%</td>
<td class="c1 l lim">
<a href="http://www.ncbi.nlm.nih.gov/nucleotide/485601474?report=genbank&amp;log$=nucltop&amp;blast_rank=10&amp;RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J3E_5">3J3E_5</a>
</td>
</tr><tr id="dtr_357380483" ind="11" class="odd dflLnk">
<td class="l c0"><span class="ind">11</span><input id="chk_11" class="cb" name="getSeqGi" value="357380483" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_11" class="accsb">Select seq pdb|3J0O|8</label></td>
<td class="lim l c2">
<div class="lim n">
<a title="Go to alignment for Chain 8, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9a Cryo-Em Map: Classic Pre State 2" class="deflnDesc" hsp="1" len="9" ind="11" accs="pdb|3J0O|8" seqfsta="gi|357380483" gi="357380483" seqid="357380483" id="deflnDesc_11" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_357380483">Chain 8, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9a Cryo-Em Map: Classic Pre State 2</a>
</div>
</td>
<td class="c3">18.3</td>
<td class="c4">18.3</td>
<td class="c5">56%</td>
<td class="c6">   12</td><td class="c7">100%</td>
<td class="c1 l lim">
<a href="http://www.ncbi.nlm.nih.gov/nucleotide/357380483?report=genbank&amp;log$=nucltop&amp;blast_rank=11&amp;RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J0O_8">3J0O_8</a>
</td>
</tr>
</tbody>
</table>
</div></div>
<!--</pre>  -->
</div><!--/#descriptions-->
</div><!-- descrInfo -->
</div><!--ARIA-->
</div>
</form><!-- this is the end tag for the <form in blastcgi templates -->





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<div id="alignView" class=" ">
<h2 class="resArr">
<a aria-expanded="true" role="button" aria-disabled="false" href="#" id="showAlign" class="jig-ncbitoggler-open ui-ncbitoggler-open ui-widget" data-jigconfig="indicator: 'plus-minus-big'" data-ncbitoggler-toggles="alignInfo" title="Show/hide Alignments">
<span class="ui-ncbitoggler-master-text">Alignments</span>
<span class="ui-icon ui-icon-plus-minus-big-open"></span>
</a>
</h2>

<div class="ui-helper-reset" aria-live="assertive">
<div aria-hidden="false" id="alignInfo" class="resBox ui-ncbitoggler-slave-open ui-widget ui-ncbitoggler">
<div id="alignments" class="blRes">
<span id="alnStart"></span><div seqlist="gi|557804451,gi|557804395,gi|557804339,gi|557804283,gi|557804227" indexes="1-5" id="alnShow_1" class="alnMsg"><div class="alnMsgS hidden" id="alnMsg_1">Loading alignment...<span class="db"> for sequences gi|557804451,gi|557804395,gi|557804339,gi|557804283,gi|557804227 Reading indexes 1-5</span></div><div id="alnShowReal_1" class="alnMsgR"><form name="getSeqAlignment1">
<div class="alnHdr cnf" id="alnHdr_557804451" seqid="557804451" accs="pdb|3J5A|A">
<a name="557804451"></a>
<a aria-haspopup="true" aria-expanded="false" role="button" href="#dlgDwnl_557804451" class="jig-ncbipopper toolsCtr dnld dialog" data-jigconfig="hasArrow:'true',arrowDirection:'top',closeEvent: 'click', openEvent: 'click', destPosition: 'top center', triggerPosition: 'bottom right'" id="alnDwnld_557804451" title="Download information for pdb|3J5A|A"><span>Download</span></a>
<div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dlgDwnl_557804451" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic">
<div><input seqfsta="gi|557804451" name="dwn_557804451" checked="checked" id="dwFST_557804451" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST_557804451">FASTA (complete sequence)</label></div>
<div><input seqfsta="gi|557804451" name="dwn_557804451" id="dwFSTAl_557804451" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl_557804451">FASTA (aligned sequences)</label></div>
<div class=""><input name="dwn_557804451" id="dwGenBank_557804451" getgi="557804451" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&amp;rettype=gb&amp;retmode=text" type="radio"><label class="shownInl" for="dwGenBank_557804451">GenBank (complete sequence)</label></div>
<div>
<button class="cfg" id="dw_cont_557804451">Continue</button>
<button class="cfg cnc">Cancel</button>
</div>
</div> <!-- dsDownload -->
<span class="csLinks" id="csLinks_557804451"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&amp;log$=nuclalign&amp;blast_rank=1&amp;RID=PHWP1JNZ014" class="" target="lnkPHWP1JNZ014" title="Show genbank report for 3J5A_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804451?report=graph&amp;rid=PHWP1JNZ014[557804451]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=752:2685&amp;appname=ncbiblast&amp;link_loc=fromSubj" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J5A_A in Nucleotide Graphics">Graphics</a></span>

<div class="seqlinks alnDflLn alnSortSeq"><label>Sort by:</label>
<select id="sa_557804451" onchange="SortHSPAlnSel(event,this)">
<option selected="selected" value="0">E value</option>
<option value="1"> Score</option>
<option value="3">Percent identity</option>
<option value="2">Query start position</option>
<option value="4">Subject start position</option>
</select>
</div>
<span class="alnSeqLinks">
<a title="Go to next alignment for pdb|3J58|A" class="gbd toolsCtr navNext" ref="ordinalpos=1&amp;currseq=557804451" id="alnNxt_557804451" onclick="goToNextAlign('dtr_557804451',true);"><span>Next</span></a>
<a disabled="disabled" class="gbd toolsCtr navPrev" ref="ordinalpos=1&amp;currseq=557804451" id="alnPrv_557804451" onclick="goToNextAlign('dtr_557804451',false);"><span>Previous</span></a>
<a class="gbd toolsCtr navBack" title="Go to definition line for pdb|3J5A|A" id="alnDsc_557804451" onclick="goToDefLine('dtr_557804451');" href="#dtr_557804451"><span>Descriptions</span></a>
</span>
</div>
<div class="oneSeqAln" id="aln_557804451">
<div id="dln_557804451">
<div class="dlfRow">
Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Post- Translocation State (post1, 50s Subunit)
<div><label>Sequence ID: </label><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&amp;log$=nuclalign&amp;blast_rank=1&amp;RID=PHWP1JNZ014" target="lnkPHWP1JNZ014" title="Show report for pdb|3J5A|A">pdb|3J5A|A</a><span class=" r"><label>Length: </label>2903<label>Number of Matches: </label>4</span></div>
</div>
</div>
<div class="relInf" id="relInf_557804451"><label>Related Information</label></div>
<!--
<pre>
<@aln_gene_info@>
</pre>
-->
<div class="alnAll" id="alnAll_557804451"><div id="hd_557804451_1">
<div class="dflLnk hsp"><span class="alnRn"><label>Range 1: 961 to 976</label><span class="" id="rng_557804451"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&amp;log$=nuclalign&amp;blast_rank=1&amp;RID=PHWP1JNZ014&amp;from=961&amp;to=976" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 961 to 976 on 3J5A_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804451?report=graph&amp;rid=PHWP1JNZ014[557804451]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=961:976&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J5A_A in Nucleotide Graphics for 961 to 976 range">Graphics</a></span></span>
<span id="hsp557804451_1" class="alnParLinks">
<a init="on" class="gbd toolsCtr navNext" title="Go to next match #2 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=1&amp;currseq=557804451" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
<a class="gbd toolsCtr navPrev" disabled="disabled" title="Go to previous match #0 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=1&amp;currseq=557804451" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
<a class="gbd toolsCtr navBack hidden" href="#hsp557804451_1" title="Go to first match for pdb|3J5A|A"><span>First Match</span></a>
</span>
</div>
<table class="alnParams">
<caption class="hdnHeader">Alignment statistics for match #1</caption>
<tbody><tr>
<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
</tr>
<tr>
<td>32.2 bits(16)</td>
<td>8e-04<span class="sumN ">()</span></td>
<td>16/16(100%)</td>
<td>0/16(0%)</td>
<td>Plus/Plus</td>
<td class="aln_frame "></td>
</tr></tbody></table>
<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
</div>
<div id="ar_557804451_1">
<pre>Query  1    CGTCCGTCGTGAAGAG  16
            ||||||||||||||||
Sbjct  961  CGTCCGTCGTGAAGAG  976


</pre>
</div>
<div id="hd_557804451_2">
<div class="dflLnk hsp"><span class="alnRn"><label>Range 2: 2591 to 2598</label><span class="" id="rng_557804451"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&amp;log$=nuclalign&amp;blast_rank=1&amp;RID=PHWP1JNZ014&amp;from=2591&amp;to=2598" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2591 to 2598 on 3J5A_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804451?report=graph&amp;rid=PHWP1JNZ014[557804451]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=2591:2598&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J5A_A in Nucleotide Graphics for 2591 to 2598 range">Graphics</a></span></span>
<span id="hsp557804451_2" class="alnParLinks">
<a class="gbd toolsCtr navNext" title="Go to next match #3 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=2&amp;currseq=557804451" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
<a init="on" class="gbd toolsCtr navPrev" title="Go to previous match #1 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=2&amp;currseq=557804451" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
<a class="gbd toolsCtr navBack " href="#hsp557804451_1" title="Go to first match for pdb|3J5A|A"><span>First Match</span></a>
</span>
</div>
<table class="alnParams">
<caption class="hdnHeader">Alignment statistics for match #2</caption>
<tbody><tr>
<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
</tr>
<tr>
<td>16.4 bits(8)</td>
<td>   47<span class="sumN ">()</span></td>
<td>8/8(100%)</td>
<td>0/8(0%)</td>
<td>Plus/Plus</td>
<td class="aln_frame "></td>
</tr></tbody></table>
<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
</div>
<div id="ar_557804451_2">
<pre>Query  5     CGTCGTGA  12
             ||||||||
Sbjct  2591  CGTCGTGA  2598


</pre>
</div>
<div id="hd_557804451_3">
<div class="dflLnk hsp"><span class="alnRn"><label>Range 3: 839 to 845</label><span class="" id="rng_557804451"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&amp;log$=nuclalign&amp;blast_rank=1&amp;RID=PHWP1JNZ014&amp;from=839&amp;to=845" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 839 to 845 on 3J5A_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804451?report=graph&amp;rid=PHWP1JNZ014[557804451]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=839:845&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J5A_A in Nucleotide Graphics for 839 to 845 range">Graphics</a></span></span>
<span id="hsp557804451_3" class="alnParLinks">
<a class="gbd toolsCtr navNext" title="Go to next match #4 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=3&amp;currseq=557804451" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
<a class="gbd toolsCtr navPrev" title="Go to previous match #2 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=3&amp;currseq=557804451" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
<a class="gbd toolsCtr navBack " href="#hsp557804451_1" title="Go to first match for pdb|3J5A|A"><span>First Match</span></a>
</span>
</div>
<table class="alnParams">
<caption class="hdnHeader">Alignment statistics for match #3</caption>
<tbody><tr>
<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
</tr>
<tr>
<td>14.4 bits(7)</td>
<td>  186<span class="sumN ">()</span></td>
<td>7/7(100%)</td>
<td>0/7(0%)</td>
<td>Plus/Plus</td>
<td class="aln_frame "></td>
</tr></tbody></table>
<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
</div>
<div id="ar_557804451_3">
<pre>Query  7    TCGTGAA  13
            |||||||
Sbjct  839  TCGTGAA  845


</pre>
</div>
<div id="hd_557804451_4">
<div class="dflLnk hsp"><span class="alnRn"><label>Range 4: 2027 to 2033</label><span class="" id="rng_557804451"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&amp;log$=nuclalign&amp;blast_rank=1&amp;RID=PHWP1JNZ014&amp;from=2027&amp;to=2033" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2027 to 2033 on 3J5A_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804451?report=graph&amp;rid=PHWP1JNZ014[557804451]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=2027:2033&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J5A_A in Nucleotide Graphics for 2027 to 2033 range">Graphics</a></span></span>
<span id="hsp557804451_4" class="alnParLinks">
<a init="on" class="gbd toolsCtr navNext" disabled="disabled" title="Go to next match #5 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=4&amp;currseq=557804451" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
<a init="on" class="gbd toolsCtr navPrev" title="Go to previous match #3 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=4&amp;currseq=557804451" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
<a class="gbd toolsCtr navBack " href="#hsp557804451_1" title="Go to first match for pdb|3J5A|A"><span>First Match</span></a>
</span>
</div>
<table class="alnParams">
<caption class="hdnHeader">Alignment statistics for match #4</caption>
<tbody><tr>
<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
</tr>
<tr>
<td>14.4 bits(7)</td>
<td>  186<span class="sumN ">()</span></td>
<td>7/7(100%)</td>
<td>0/7(0%)</td>
<td>Plus/Plus</td>
<td class="aln_frame "></td>
</tr></tbody></table>
<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
</div>
<div id="ar_557804451_4">
<pre>Query  9     GTGAAGA  15
             |||||||
Sbjct  2027  GTGAAGA  2033


</pre>
</div>
</div> <!-- alnAll_557804451 -->
</div> <!-- aln_557804451 -->
<div class="alnHdr cnf" id="alnHdr_557804395" seqid="557804395" accs="pdb|3J58|A">
<a name="557804395"></a>
<a aria-haspopup="true" aria-expanded="false" role="button" href="#dlgDwnl_557804395" class="jig-ncbipopper toolsCtr dnld dialog" data-jigconfig="hasArrow:'true',arrowDirection:'top',closeEvent: 'click', openEvent: 'click', destPosition: 'top center', triggerPosition: 'bottom right'" id="alnDwnld_557804395" title="Download information for pdb|3J58|A"><span>Download</span></a>
<div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dlgDwnl_557804395" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic">
<div><input seqfsta="gi|557804395" name="dwn_557804395" checked="checked" id="dwFST_557804395" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST_557804395">FASTA (complete sequence)</label></div>
<div><input seqfsta="gi|557804395" name="dwn_557804395" id="dwFSTAl_557804395" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl_557804395">FASTA (aligned sequences)</label></div>
<div class=""><input name="dwn_557804395" id="dwGenBank_557804395" getgi="557804395" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&amp;rettype=gb&amp;retmode=text" type="radio"><label class="shownInl" for="dwGenBank_557804395">GenBank (complete sequence)</label></div>
<div>
<button class="cfg" id="dw_cont_557804395">Continue</button>
<button class="cfg cnc">Cancel</button>
</div>
</div> <!-- dsDownload -->
<span class="csLinks" id="csLinks_557804395"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&amp;log$=nuclalign&amp;blast_rank=2&amp;RID=PHWP1JNZ014" class="" target="lnkPHWP1JNZ014" title="Show genbank report for 3J58_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804395?report=graph&amp;rid=PHWP1JNZ014[557804395]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=752:2685&amp;appname=ncbiblast&amp;link_loc=fromSubj" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J58_A in Nucleotide Graphics">Graphics</a></span>

<div class="seqlinks alnDflLn alnSortSeq"><label>Sort by:</label>
<select id="sa_557804395" onchange="SortHSPAlnSel(event,this)">
<option selected="selected" value="0">E value</option>
<option value="1"> Score</option>
<option value="3">Percent identity</option>
<option value="2">Query start position</option>
<option value="4">Subject start position</option>
</select>
</div>
<span class="alnSeqLinks">
<a title="Go to next alignment for pdb|3J56|A" class="gbd toolsCtr navNext" ref="ordinalpos=2&amp;currseq=557804395" id="alnNxt_557804395" onclick="goToNextAlign('dtr_557804395',true);"><span>Next</span></a>
<a title="Go to previous alignment for pdb|3J5A|A" class="gbd toolsCtr navPrev" ref="ordinalpos=2&amp;currseq=557804395" id="alnPrv_557804395" onclick="goToNextAlign('dtr_557804395',false);"><span>Previous</span></a>
<a class="gbd toolsCtr navBack" title="Go to definition line for pdb|3J58|A" id="alnDsc_557804395" onclick="goToDefLine('dtr_557804395');" href="#dtr_557804395"><span>Descriptions</span></a>
</span>
</div>
<div class="oneSeqAln" id="aln_557804395">
<div id="dln_557804395">
<div class="dlfRow">
Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5b, 50s Subunit)
<div><label>Sequence ID: </label><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&amp;log$=nuclalign&amp;blast_rank=2&amp;RID=PHWP1JNZ014" target="lnkPHWP1JNZ014" title="Show report for pdb|3J58|A">pdb|3J58|A</a><span class=" r"><label>Length: </label>2903<label>Number of Matches: </label>4</span></div>
</div>
</div>
<div class="relInf" id="relInf_557804395"><label>Related Information</label></div>
<!--
<pre>
<@aln_gene_info@>
</pre>
-->
<div class="alnAll" id="alnAll_557804395"><div id="hd_557804395_1">
<div class="dflLnk hsp"><span class="alnRn"><label>Range 1: 961 to 976</label><span class="" id="rng_557804395"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&amp;log$=nuclalign&amp;blast_rank=2&amp;RID=PHWP1JNZ014&amp;from=961&amp;to=976" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 961 to 976 on 3J58_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804395?report=graph&amp;rid=PHWP1JNZ014[557804395]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=961:976&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J58_A in Nucleotide Graphics for 961 to 976 range">Graphics</a></span></span>
<span id="hsp557804395_1" class="alnParLinks">
<a class="gbd toolsCtr navNext" title="Go to next match #2 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=1&amp;currseq=557804395" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
<a class="gbd toolsCtr navPrev" disabled="disabled" title="Go to previous match #0 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=1&amp;currseq=557804395" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
<a class="gbd toolsCtr navBack hidden" href="#hsp557804395_1" title="Go to first match for pdb|3J58|A"><span>First Match</span></a>
</span>
</div>
<table class="alnParams">
<caption class="hdnHeader">Alignment statistics for match #1</caption>
<tbody><tr>
<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
</tr>
<tr>
<td>32.2 bits(16)</td>
<td>8e-04<span class="sumN ">()</span></td>
<td>16/16(100%)</td>
<td>0/16(0%)</td>
<td>Plus/Plus</td>
<td class="aln_frame "></td>
</tr></tbody></table>
<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
</div>
<div id="ar_557804395_1">
<pre>Query  1    CGTCCGTCGTGAAGAG  16
            ||||||||||||||||
Sbjct  961  CGTCCGTCGTGAAGAG  976


</pre>
</div>
<div id="hd_557804395_2">
<div class="dflLnk hsp"><span class="alnRn"><label>Range 2: 2591 to 2598</label><span class="" id="rng_557804395"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&amp;log$=nuclalign&amp;blast_rank=2&amp;RID=PHWP1JNZ014&amp;from=2591&amp;to=2598" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2591 to 2598 on 3J58_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804395?report=graph&amp;rid=PHWP1JNZ014[557804395]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=2591:2598&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J58_A in Nucleotide Graphics for 2591 to 2598 range">Graphics</a></span></span>
<span id="hsp557804395_2" class="alnParLinks">
<a class="gbd toolsCtr navNext" title="Go to next match #3 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=2&amp;currseq=557804395" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
<a class="gbd toolsCtr navPrev" title="Go to previous match #1 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=2&amp;currseq=557804395" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
<a class="gbd toolsCtr navBack " href="#hsp557804395_1" title="Go to first match for pdb|3J58|A"><span>First Match</span></a>
</span>
</div>
<table class="alnParams">
<caption class="hdnHeader">Alignment statistics for match #2</caption>
<tbody><tr>
<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
</tr>
<tr>
<td>16.4 bits(8)</td>
<td>   47<span class="sumN ">()</span></td>
<td>8/8(100%)</td>
<td>0/8(0%)</td>
<td>Plus/Plus</td>
<td class="aln_frame "></td>
</tr></tbody></table>
<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
</div>
<div id="ar_557804395_2">
<pre>Query  5     CGTCGTGA  12
             ||||||||
Sbjct  2591  CGTCGTGA  2598


</pre>
</div>
<div id="hd_557804395_3">
<div class="dflLnk hsp"><span class="alnRn"><label>Range 3: 839 to 845</label><span class="" id="rng_557804395"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&amp;log$=nuclalign&amp;blast_rank=2&amp;RID=PHWP1JNZ014&amp;from=839&amp;to=845" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 839 to 845 on 3J58_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804395?report=graph&amp;rid=PHWP1JNZ014[557804395]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=839:845&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J58_A in Nucleotide Graphics for 839 to 845 range">Graphics</a></span></span>
<span id="hsp557804395_3" class="alnParLinks">
<a class="gbd toolsCtr navNext" title="Go to next match #4 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=3&amp;currseq=557804395" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
<a class="gbd toolsCtr navPrev" title="Go to previous match #2 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=3&amp;currseq=557804395" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
<a class="gbd toolsCtr navBack " href="#hsp557804395_1" title="Go to first match for pdb|3J58|A"><span>First Match</span></a>
</span>
</div>
<table class="alnParams">
<caption class="hdnHeader">Alignment statistics for match #3</caption>
<tbody><tr>
<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
</tr>
<tr>
<td>14.4 bits(7)</td>
<td>  186<span class="sumN ">()</span></td>
<td>7/7(100%)</td>
<td>0/7(0%)</td>
<td>Plus/Plus</td>
<td class="aln_frame "></td>
</tr></tbody></table>
<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
</div>
<div id="ar_557804395_3">
<pre>Query  7    TCGTGAA  13
            |||||||
Sbjct  839  TCGTGAA  845


</pre>
</div>
<div id="hd_557804395_4">
<div class="dflLnk hsp"><span class="alnRn"><label>Range 4: 2027 to 2033</label><span class="" id="rng_557804395"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&amp;log$=nuclalign&amp;blast_rank=2&amp;RID=PHWP1JNZ014&amp;from=2027&amp;to=2033" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2027 to 2033 on 3J58_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804395?report=graph&amp;rid=PHWP1JNZ014[557804395]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=2027:2033&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J58_A in Nucleotide Graphics for 2027 to 2033 range">Graphics</a></span></span>
<span id="hsp557804395_4" class="alnParLinks">
<a class="gbd toolsCtr navNext" disabled="disabled" title="Go to next match #5 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=4&amp;currseq=557804395" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
<a class="gbd toolsCtr navPrev" title="Go to previous match #3 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=4&amp;currseq=557804395" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
<a class="gbd toolsCtr navBack " href="#hsp557804395_1" title="Go to first match for pdb|3J58|A"><span>First Match</span></a>
</span>
</div>
<table class="alnParams">
<caption class="hdnHeader">Alignment statistics for match #4</caption>
<tbody><tr>
<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
</tr>
<tr>
<td>14.4 bits(7)</td>
<td>  186<span class="sumN ">()</span></td>
<td>7/7(100%)</td>
<td>0/7(0%)</td>
<td>Plus/Plus</td>
<td class="aln_frame "></td>
</tr></tbody></table>
<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
</div>
<div id="ar_557804395_4">
<pre>Query  9     GTGAAGA  15
             |||||||
Sbjct  2027  GTGAAGA  2033


</pre>
</div>
</div> <!-- alnAll_557804395 -->
</div> <!-- aln_557804395 -->
<div class="alnHdr cnf" id="alnHdr_557804339" seqid="557804339" accs="pdb|3J56|A">
<a name="557804339"></a>
<a aria-haspopup="true" aria-expanded="false" role="button" href="#dlgDwnl_557804339" class="jig-ncbipopper toolsCtr dnld dialog" data-jigconfig="hasArrow:'true',arrowDirection:'top',closeEvent: 'click', openEvent: 'click', destPosition: 'top center', triggerPosition: 'bottom right'" id="alnDwnld_557804339" title="Download information for pdb|3J56|A"><span>Download</span></a>
<div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dlgDwnl_557804339" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic">
<div><input seqfsta="gi|557804339" name="dwn_557804339" checked="checked" id="dwFST_557804339" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST_557804339">FASTA (complete sequence)</label></div>
<div><input seqfsta="gi|557804339" name="dwn_557804339" id="dwFSTAl_557804339" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl_557804339">FASTA (aligned sequences)</label></div>
<div class=""><input name="dwn_557804339" id="dwGenBank_557804339" getgi="557804339" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&amp;rettype=gb&amp;retmode=text" type="radio"><label class="shownInl" for="dwGenBank_557804339">GenBank (complete sequence)</label></div>
<div>
<button class="cfg" id="dw_cont_557804339">Continue</button>
<button class="cfg cnc">Cancel</button>
</div>
</div> <!-- dsDownload -->
<span class="csLinks" id="csLinks_557804339"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&amp;log$=nuclalign&amp;blast_rank=3&amp;RID=PHWP1JNZ014" class="" target="lnkPHWP1JNZ014" title="Show genbank report for 3J56_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804339?report=graph&amp;rid=PHWP1JNZ014[557804339]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=752:2685&amp;appname=ncbiblast&amp;link_loc=fromSubj" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J56_A in Nucleotide Graphics">Graphics</a></span>

<div class="seqlinks alnDflLn alnSortSeq"><label>Sort by:</label>
<select id="sa_557804339" onchange="SortHSPAlnSel(event,this)">
<option selected="selected" value="0">E value</option>
<option value="1"> Score</option>
<option value="3">Percent identity</option>
<option value="2">Query start position</option>
<option value="4">Subject start position</option>
</select>
</div>
<span class="alnSeqLinks">
<a title="Go to next alignment for pdb|3J54|A" class="gbd toolsCtr navNext" ref="ordinalpos=3&amp;currseq=557804339" id="alnNxt_557804339" onclick="goToNextAlign('dtr_557804339',true);"><span>Next</span></a>
<a title="Go to previous alignment for pdb|3J58|A" class="gbd toolsCtr navPrev" ref="ordinalpos=3&amp;currseq=557804339" id="alnPrv_557804339" onclick="goToNextAlign('dtr_557804339',false);"><span>Previous</span></a>
<a class="gbd toolsCtr navBack" title="Go to definition line for pdb|3J56|A" id="alnDsc_557804339" onclick="goToDefLine('dtr_557804339');" href="#dtr_557804339"><span>Descriptions</span></a>
</span>
</div>
<div class="oneSeqAln" id="aln_557804339">
<div id="dln_557804339">
<div class="dlfRow">
Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5a, 50s Subunit)
<div><label>Sequence ID: </label><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&amp;log$=nuclalign&amp;blast_rank=3&amp;RID=PHWP1JNZ014" target="lnkPHWP1JNZ014" title="Show report for pdb|3J56|A">pdb|3J56|A</a><span class=" r"><label>Length: </label>2903<label>Number of Matches: </label>4</span></div>
</div>
</div>
<div class="relInf" id="relInf_557804339"><label>Related Information</label></div>
<!--
<pre>
<@aln_gene_info@>
</pre>
-->
<div class="alnAll" id="alnAll_557804339"><div id="hd_557804339_1">
<div class="dflLnk hsp"><span class="alnRn"><label>Range 1: 961 to 976</label><span class="" id="rng_557804339"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&amp;log$=nuclalign&amp;blast_rank=3&amp;RID=PHWP1JNZ014&amp;from=961&amp;to=976" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 961 to 976 on 3J56_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804339?report=graph&amp;rid=PHWP1JNZ014[557804339]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=961:976&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J56_A in Nucleotide Graphics for 961 to 976 range">Graphics</a></span></span>
<span id="hsp557804339_1" class="alnParLinks">
<a class="gbd toolsCtr navNext" title="Go to next match #2 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=1&amp;currseq=557804339" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
<a class="gbd toolsCtr navPrev" disabled="disabled" title="Go to previous match #0 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=1&amp;currseq=557804339" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
<a class="gbd toolsCtr navBack hidden" href="#hsp557804339_1" title="Go to first match for pdb|3J56|A"><span>First Match</span></a>
</span>
</div>
<table class="alnParams">
<caption class="hdnHeader">Alignment statistics for match #1</caption>
<tbody><tr>
<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
</tr>
<tr>
<td>32.2 bits(16)</td>
<td>8e-04<span class="sumN ">()</span></td>
<td>16/16(100%)</td>
<td>0/16(0%)</td>
<td>Plus/Plus</td>
<td class="aln_frame "></td>
</tr></tbody></table>
<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
</div>
<div id="ar_557804339_1">
<pre>Query  1    CGTCCGTCGTGAAGAG  16
            ||||||||||||||||
Sbjct  961  CGTCCGTCGTGAAGAG  976


</pre>
</div>
<div id="hd_557804339_2">
<div class="dflLnk hsp"><span class="alnRn"><label>Range 2: 2591 to 2598</label><span class="" id="rng_557804339"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&amp;log$=nuclalign&amp;blast_rank=3&amp;RID=PHWP1JNZ014&amp;from=2591&amp;to=2598" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2591 to 2598 on 3J56_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804339?report=graph&amp;rid=PHWP1JNZ014[557804339]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=2591:2598&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J56_A in Nucleotide Graphics for 2591 to 2598 range">Graphics</a></span></span>
<span id="hsp557804339_2" class="alnParLinks">
<a class="gbd toolsCtr navNext" title="Go to next match #3 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=2&amp;currseq=557804339" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
<a class="gbd toolsCtr navPrev" title="Go to previous match #1 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=2&amp;currseq=557804339" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
<a class="gbd toolsCtr navBack " href="#hsp557804339_1" title="Go to first match for pdb|3J56|A"><span>First Match</span></a>
</span>
</div>
<table class="alnParams">
<caption class="hdnHeader">Alignment statistics for match #2</caption>
<tbody><tr>
<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
</tr>
<tr>
<td>16.4 bits(8)</td>
<td>   47<span class="sumN ">()</span></td>
<td>8/8(100%)</td>
<td>0/8(0%)</td>
<td>Plus/Plus</td>
<td class="aln_frame "></td>
</tr></tbody></table>
<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
</div>
<div id="ar_557804339_2">
<pre>Query  5     CGTCGTGA  12
             ||||||||
Sbjct  2591  CGTCGTGA  2598


</pre>
</div>
<div id="hd_557804339_3">
<div class="dflLnk hsp"><span class="alnRn"><label>Range 3: 839 to 845</label><span class="" id="rng_557804339"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&amp;log$=nuclalign&amp;blast_rank=3&amp;RID=PHWP1JNZ014&amp;from=839&amp;to=845" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 839 to 845 on 3J56_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804339?report=graph&amp;rid=PHWP1JNZ014[557804339]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=839:845&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J56_A in Nucleotide Graphics for 839 to 845 range">Graphics</a></span></span>
<span id="hsp557804339_3" class="alnParLinks">
<a class="gbd toolsCtr navNext" title="Go to next match #4 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=3&amp;currseq=557804339" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
<a class="gbd toolsCtr navPrev" title="Go to previous match #2 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=3&amp;currseq=557804339" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
<a class="gbd toolsCtr navBack " href="#hsp557804339_1" title="Go to first match for pdb|3J56|A"><span>First Match</span></a>
</span>
</div>
<table class="alnParams">
<caption class="hdnHeader">Alignment statistics for match #3</caption>
<tbody><tr>
<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
</tr>
<tr>
<td>14.4 bits(7)</td>
<td>  186<span class="sumN ">()</span></td>
<td>7/7(100%)</td>
<td>0/7(0%)</td>
<td>Plus/Plus</td>
<td class="aln_frame "></td>
</tr></tbody></table>
<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
</div>
<div id="ar_557804339_3">
<pre>Query  7    TCGTGAA  13
            |||||||
Sbjct  839  TCGTGAA  845


</pre>
</div>
<div id="hd_557804339_4">
<div class="dflLnk hsp"><span class="alnRn"><label>Range 4: 2027 to 2033</label><span class="" id="rng_557804339"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&amp;log$=nuclalign&amp;blast_rank=3&amp;RID=PHWP1JNZ014&amp;from=2027&amp;to=2033" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2027 to 2033 on 3J56_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804339?report=graph&amp;rid=PHWP1JNZ014[557804339]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=2027:2033&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J56_A in Nucleotide Graphics for 2027 to 2033 range">Graphics</a></span></span>
<span id="hsp557804339_4" class="alnParLinks">
<a class="gbd toolsCtr navNext" disabled="disabled" title="Go to next match #5 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=4&amp;currseq=557804339" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
<a class="gbd toolsCtr navPrev" title="Go to previous match #3 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=4&amp;currseq=557804339" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
<a class="gbd toolsCtr navBack " href="#hsp557804339_1" title="Go to first match for pdb|3J56|A"><span>First Match</span></a>
</span>
</div>
<table class="alnParams">
<caption class="hdnHeader">Alignment statistics for match #4</caption>
<tbody><tr>
<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
</tr>
<tr>
<td>14.4 bits(7)</td>
<td>  186<span class="sumN ">()</span></td>
<td>7/7(100%)</td>
<td>0/7(0%)</td>
<td>Plus/Plus</td>
<td class="aln_frame "></td>
</tr></tbody></table>
<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
</div>
<div id="ar_557804339_4">
<pre>Query  9     GTGAAGA  15
             |||||||
Sbjct  2027  GTGAAGA  2033


</pre>
</div>
</div> <!-- alnAll_557804339 -->
</div> <!-- aln_557804339 -->
<div class="alnHdr cnf" id="alnHdr_557804283" seqid="557804283" accs="pdb|3J54|A">
<a name="557804283"></a>
<a aria-haspopup="true" aria-expanded="false" role="button" href="#dlgDwnl_557804283" class="jig-ncbipopper toolsCtr dnld dialog" data-jigconfig="hasArrow:'true',arrowDirection:'top',closeEvent: 'click', openEvent: 'click', destPosition: 'top center', triggerPosition: 'bottom right'" id="alnDwnld_557804283" title="Download information for pdb|3J54|A"><span>Download</span></a>
<div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dlgDwnl_557804283" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic">
<div><input seqfsta="gi|557804283" name="dwn_557804283" checked="checked" id="dwFST_557804283" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST_557804283">FASTA (complete sequence)</label></div>
<div><input seqfsta="gi|557804283" name="dwn_557804283" id="dwFSTAl_557804283" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl_557804283">FASTA (aligned sequences)</label></div>
<div class=""><input name="dwn_557804283" id="dwGenBank_557804283" getgi="557804283" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&amp;rettype=gb&amp;retmode=text" type="radio"><label class="shownInl" for="dwGenBank_557804283">GenBank (complete sequence)</label></div>
<div>
<button class="cfg" id="dw_cont_557804283">Continue</button>
<button class="cfg cnc">Cancel</button>
</div>
</div> <!-- dsDownload -->
<span class="csLinks" id="csLinks_557804283"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&amp;log$=nuclalign&amp;blast_rank=4&amp;RID=PHWP1JNZ014" class="" target="lnkPHWP1JNZ014" title="Show genbank report for 3J54_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804283?report=graph&amp;rid=PHWP1JNZ014[557804283]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=752:2685&amp;appname=ncbiblast&amp;link_loc=fromSubj" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J54_A in Nucleotide Graphics">Graphics</a></span>

<div class="seqlinks alnDflLn alnSortSeq"><label>Sort by:</label>
<select id="sa_557804283" onchange="SortHSPAlnSel(event,this)">
<option selected="selected" value="0">E value</option>
<option value="1"> Score</option>
<option value="3">Percent identity</option>
<option value="2">Query start position</option>
<option value="4">Subject start position</option>
</select>
</div>
<span class="alnSeqLinks">
<a title="Go to next alignment for pdb|3J52|A" class="gbd toolsCtr navNext" ref="ordinalpos=4&amp;currseq=557804283" id="alnNxt_557804283" onclick="goToNextAlign('dtr_557804283',true);"><span>Next</span></a>
<a title="Go to previous alignment for pdb|3J56|A" class="gbd toolsCtr navPrev" ref="ordinalpos=4&amp;currseq=557804283" id="alnPrv_557804283" onclick="goToNextAlign('dtr_557804283',false);"><span>Previous</span></a>
<a class="gbd toolsCtr navBack" title="Go to definition line for pdb|3J54|A" id="alnDsc_557804283" onclick="goToDefLine('dtr_557804283');" href="#dtr_557804283"><span>Descriptions</span></a>
</span>
</div>
<div class="oneSeqAln" id="aln_557804283">
<div id="dln_557804283">
<div class="dlfRow">
Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre4, 50s Subunit)
<div><label>Sequence ID: </label><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&amp;log$=nuclalign&amp;blast_rank=4&amp;RID=PHWP1JNZ014" target="lnkPHWP1JNZ014" title="Show report for pdb|3J54|A">pdb|3J54|A</a><span class=" r"><label>Length: </label>2903<label>Number of Matches: </label>4</span></div>
</div>
</div>
<div class="relInf" id="relInf_557804283"><label>Related Information</label></div>
<!--
<pre>
<@aln_gene_info@>
</pre>
-->
<div class="alnAll" id="alnAll_557804283"><div id="hd_557804283_1">
<div class="dflLnk hsp"><span class="alnRn"><label>Range 1: 961 to 976</label><span class="" id="rng_557804283"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&amp;log$=nuclalign&amp;blast_rank=4&amp;RID=PHWP1JNZ014&amp;from=961&amp;to=976" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 961 to 976 on 3J54_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804283?report=graph&amp;rid=PHWP1JNZ014[557804283]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=961:976&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J54_A in Nucleotide Graphics for 961 to 976 range">Graphics</a></span></span>
<span id="hsp557804283_1" class="alnParLinks">
<a class="gbd toolsCtr navNext" title="Go to next match #2 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=1&amp;currseq=557804283" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
<a class="gbd toolsCtr navPrev" disabled="disabled" title="Go to previous match #0 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=1&amp;currseq=557804283" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
<a class="gbd toolsCtr navBack hidden" href="#hsp557804283_1" title="Go to first match for pdb|3J54|A"><span>First Match</span></a>
</span>
</div>
<table class="alnParams">
<caption class="hdnHeader">Alignment statistics for match #1</caption>
<tbody><tr>
<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
</tr>
<tr>
<td>32.2 bits(16)</td>
<td>8e-04<span class="sumN ">()</span></td>
<td>16/16(100%)</td>
<td>0/16(0%)</td>
<td>Plus/Plus</td>
<td class="aln_frame "></td>
</tr></tbody></table>
<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
</div>
<div id="ar_557804283_1">
<pre>Query  1    CGTCCGTCGTGAAGAG  16
            ||||||||||||||||
Sbjct  961  CGTCCGTCGTGAAGAG  976


</pre>
</div>
<div id="hd_557804283_2">
<div class="dflLnk hsp"><span class="alnRn"><label>Range 2: 2591 to 2598</label><span class="" id="rng_557804283"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&amp;log$=nuclalign&amp;blast_rank=4&amp;RID=PHWP1JNZ014&amp;from=2591&amp;to=2598" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2591 to 2598 on 3J54_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804283?report=graph&amp;rid=PHWP1JNZ014[557804283]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=2591:2598&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J54_A in Nucleotide Graphics for 2591 to 2598 range">Graphics</a></span></span>
<span id="hsp557804283_2" class="alnParLinks">
<a class="gbd toolsCtr navNext" title="Go to next match #3 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=2&amp;currseq=557804283" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
<a class="gbd toolsCtr navPrev" title="Go to previous match #1 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=2&amp;currseq=557804283" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
<a class="gbd toolsCtr navBack " href="#hsp557804283_1" title="Go to first match for pdb|3J54|A"><span>First Match</span></a>
</span>
</div>
<table class="alnParams">
<caption class="hdnHeader">Alignment statistics for match #2</caption>
<tbody><tr>
<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
</tr>
<tr>
<td>16.4 bits(8)</td>
<td>   47<span class="sumN ">()</span></td>
<td>8/8(100%)</td>
<td>0/8(0%)</td>
<td>Plus/Plus</td>
<td class="aln_frame "></td>
</tr></tbody></table>
<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
</div>
<div id="ar_557804283_2">
<pre>Query  5     CGTCGTGA  12
             ||||||||
Sbjct  2591  CGTCGTGA  2598


</pre>
</div>
<div id="hd_557804283_3">
<div class="dflLnk hsp"><span class="alnRn"><label>Range 3: 839 to 845</label><span class="" id="rng_557804283"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&amp;log$=nuclalign&amp;blast_rank=4&amp;RID=PHWP1JNZ014&amp;from=839&amp;to=845" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 839 to 845 on 3J54_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804283?report=graph&amp;rid=PHWP1JNZ014[557804283]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=839:845&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J54_A in Nucleotide Graphics for 839 to 845 range">Graphics</a></span></span>
<span id="hsp557804283_3" class="alnParLinks">
<a class="gbd toolsCtr navNext" title="Go to next match #4 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=3&amp;currseq=557804283" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
<a class="gbd toolsCtr navPrev" title="Go to previous match #2 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=3&amp;currseq=557804283" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
<a class="gbd toolsCtr navBack " href="#hsp557804283_1" title="Go to first match for pdb|3J54|A"><span>First Match</span></a>
</span>
</div>
<table class="alnParams">
<caption class="hdnHeader">Alignment statistics for match #3</caption>
<tbody><tr>
<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
</tr>
<tr>
<td>14.4 bits(7)</td>
<td>  186<span class="sumN ">()</span></td>
<td>7/7(100%)</td>
<td>0/7(0%)</td>
<td>Plus/Plus</td>
<td class="aln_frame "></td>
</tr></tbody></table>
<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
</div>
<div id="ar_557804283_3">
<pre>Query  7    TCGTGAA  13
            |||||||
Sbjct  839  TCGTGAA  845


</pre>
</div>
<div id="hd_557804283_4">
<div class="dflLnk hsp"><span class="alnRn"><label>Range 4: 2027 to 2033</label><span class="" id="rng_557804283"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&amp;log$=nuclalign&amp;blast_rank=4&amp;RID=PHWP1JNZ014&amp;from=2027&amp;to=2033" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2027 to 2033 on 3J54_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804283?report=graph&amp;rid=PHWP1JNZ014[557804283]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=2027:2033&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J54_A in Nucleotide Graphics for 2027 to 2033 range">Graphics</a></span></span>
<span id="hsp557804283_4" class="alnParLinks">
<a class="gbd toolsCtr navNext" disabled="disabled" title="Go to next match #5 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=4&amp;currseq=557804283" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
<a class="gbd toolsCtr navPrev" title="Go to previous match #3 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=4&amp;currseq=557804283" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
<a class="gbd toolsCtr navBack " href="#hsp557804283_1" title="Go to first match for pdb|3J54|A"><span>First Match</span></a>
</span>
</div>
<table class="alnParams">
<caption class="hdnHeader">Alignment statistics for match #4</caption>
<tbody><tr>
<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
</tr>
<tr>
<td>14.4 bits(7)</td>
<td>  186<span class="sumN ">()</span></td>
<td>7/7(100%)</td>
<td>0/7(0%)</td>
<td>Plus/Plus</td>
<td class="aln_frame "></td>
</tr></tbody></table>
<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
</div>
<div id="ar_557804283_4">
<pre>Query  9     GTGAAGA  15
             |||||||
Sbjct  2027  GTGAAGA  2033


</pre>
</div>
</div> <!-- alnAll_557804283 -->
</div> <!-- aln_557804283 -->
<div class="alnHdr cnf" id="alnHdr_557804227" seqid="557804227" accs="pdb|3J52|A">
<a name="557804227"></a>
<a aria-haspopup="true" aria-expanded="false" role="button" href="#dlgDwnl_557804227" class="jig-ncbipopper toolsCtr dnld dialog" data-jigconfig="hasArrow:'true',arrowDirection:'top',closeEvent: 'click', openEvent: 'click', destPosition: 'top center', triggerPosition: 'bottom right'" id="alnDwnld_557804227" title="Download information for pdb|3J52|A"><span>Download</span></a>
<div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dlgDwnl_557804227" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic">
<div><input seqfsta="gi|557804227" name="dwn_557804227" checked="checked" id="dwFST_557804227" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST_557804227">FASTA (complete sequence)</label></div>
<div><input seqfsta="gi|557804227" name="dwn_557804227" id="dwFSTAl_557804227" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl_557804227">FASTA (aligned sequences)</label></div>
<div class=""><input name="dwn_557804227" id="dwGenBank_557804227" getgi="557804227" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&amp;rettype=gb&amp;retmode=text" type="radio"><label class="shownInl" for="dwGenBank_557804227">GenBank (complete sequence)</label></div>
<div>
<button class="cfg" id="dw_cont_557804227">Continue</button>
<button class="cfg cnc">Cancel</button>
</div>
</div> <!-- dsDownload -->
<span class="csLinks" id="csLinks_557804227"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&amp;log$=nuclalign&amp;blast_rank=5&amp;RID=PHWP1JNZ014" class="" target="lnkPHWP1JNZ014" title="Show genbank report for 3J52_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804227?report=graph&amp;rid=PHWP1JNZ014[557804227]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=752:2685&amp;appname=ncbiblast&amp;link_loc=fromSubj" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J52_A in Nucleotide Graphics">Graphics</a></span>

<div class="seqlinks alnDflLn alnSortSeq"><label>Sort by:</label>
<select id="sa_557804227" onchange="SortHSPAlnSel(event,this)">
<option selected="selected" value="0">E value</option>
<option value="1"> Score</option>
<option value="3">Percent identity</option>
<option value="2">Query start position</option>
<option value="4">Subject start position</option>
</select>
</div>
<span class="alnSeqLinks">
<a title="Go to next alignment for pdb|3J51|A" class="gbd toolsCtr navNext" ref="ordinalpos=5&amp;currseq=557804227" id="alnNxt_557804227" onclick="goToNextAlign('dtr_557804227',true);"><span>Next</span></a>
<a title="Go to previous alignment for pdb|3J54|A" class="gbd toolsCtr navPrev" ref="ordinalpos=5&amp;currseq=557804227" id="alnPrv_557804227" onclick="goToNextAlign('dtr_557804227',false);"><span>Previous</span></a>
<a class="gbd toolsCtr navBack" title="Go to definition line for pdb|3J52|A" id="alnDsc_557804227" onclick="goToDefLine('dtr_557804227');" href="#dtr_557804227"><span>Descriptions</span></a>
</span>
</div>
<div class="oneSeqAln" id="aln_557804227">
<div id="dln_557804227">
<div class="dlfRow">
Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1a, 50s Subunit)
<div><label>Sequence ID: </label><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&amp;log$=nuclalign&amp;blast_rank=5&amp;RID=PHWP1JNZ014" target="lnkPHWP1JNZ014" title="Show report for pdb|3J52|A">pdb|3J52|A</a><span class=" r"><label>Length: </label>2903<label>Number of Matches: </label>4</span></div>
</div>
</div>
<div class="relInf" id="relInf_557804227"><label>Related Information</label></div>
<!--
<pre>
<@aln_gene_info@>
</pre>
-->
<div class="alnAll" id="alnAll_557804227"><div id="hd_557804227_1">
<div class="dflLnk hsp"><span class="alnRn"><label>Range 1: 961 to 976</label><span class="" id="rng_557804227"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&amp;log$=nuclalign&amp;blast_rank=5&amp;RID=PHWP1JNZ014&amp;from=961&amp;to=976" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 961 to 976 on 3J52_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804227?report=graph&amp;rid=PHWP1JNZ014[557804227]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=961:976&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J52_A in Nucleotide Graphics for 961 to 976 range">Graphics</a></span></span>
<span id="hsp557804227_1" class="alnParLinks">
<a class="gbd toolsCtr navNext" title="Go to next match #2 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=1&amp;currseq=557804227" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
<a class="gbd toolsCtr navPrev" disabled="disabled" title="Go to previous match #0 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=1&amp;currseq=557804227" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
<a class="gbd toolsCtr navBack hidden" href="#hsp557804227_1" title="Go to first match for pdb|3J52|A"><span>First Match</span></a>
</span>
</div>
<table class="alnParams">
<caption class="hdnHeader">Alignment statistics for match #1</caption>
<tbody><tr>
<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
</tr>
<tr>
<td>32.2 bits(16)</td>
<td>8e-04<span class="sumN ">()</span></td>
<td>16/16(100%)</td>
<td>0/16(0%)</td>
<td>Plus/Plus</td>
<td class="aln_frame "></td>
</tr></tbody></table>
<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
</div>
<div id="ar_557804227_1">
<pre>Query  1    CGTCCGTCGTGAAGAG  16
            ||||||||||||||||
Sbjct  961  CGTCCGTCGTGAAGAG  976


</pre>
</div>
<div id="hd_557804227_2">
<div class="dflLnk hsp"><span class="alnRn"><label>Range 2: 2591 to 2598</label><span class="" id="rng_557804227"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&amp;log$=nuclalign&amp;blast_rank=5&amp;RID=PHWP1JNZ014&amp;from=2591&amp;to=2598" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2591 to 2598 on 3J52_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804227?report=graph&amp;rid=PHWP1JNZ014[557804227]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=2591:2598&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J52_A in Nucleotide Graphics for 2591 to 2598 range">Graphics</a></span></span>
<span id="hsp557804227_2" class="alnParLinks">
<a class="gbd toolsCtr navNext" title="Go to next match #3 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=2&amp;currseq=557804227" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
<a class="gbd toolsCtr navPrev" title="Go to previous match #1 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=2&amp;currseq=557804227" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
<a class="gbd toolsCtr navBack " href="#hsp557804227_1" title="Go to first match for pdb|3J52|A"><span>First Match</span></a>
</span>
</div>
<table class="alnParams">
<caption class="hdnHeader">Alignment statistics for match #2</caption>
<tbody><tr>
<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
</tr>
<tr>
<td>16.4 bits(8)</td>
<td>   47<span class="sumN ">()</span></td>
<td>8/8(100%)</td>
<td>0/8(0%)</td>
<td>Plus/Plus</td>
<td class="aln_frame "></td>
</tr></tbody></table>
<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
</div>
<div id="ar_557804227_2">
<pre>Query  5     CGTCGTGA  12
             ||||||||
Sbjct  2591  CGTCGTGA  2598


</pre>
</div>
<div id="hd_557804227_3">
<div class="dflLnk hsp"><span class="alnRn"><label>Range 3: 839 to 845</label><span class="" id="rng_557804227"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&amp;log$=nuclalign&amp;blast_rank=5&amp;RID=PHWP1JNZ014&amp;from=839&amp;to=845" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 839 to 845 on 3J52_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804227?report=graph&amp;rid=PHWP1JNZ014[557804227]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=839:845&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J52_A in Nucleotide Graphics for 839 to 845 range">Graphics</a></span></span>
<span id="hsp557804227_3" class="alnParLinks">
<a class="gbd toolsCtr navNext" title="Go to next match #4 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=3&amp;currseq=557804227" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
<a class="gbd toolsCtr navPrev" title="Go to previous match #2 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=3&amp;currseq=557804227" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
<a class="gbd toolsCtr navBack " href="#hsp557804227_1" title="Go to first match for pdb|3J52|A"><span>First Match</span></a>
</span>
</div>
<table class="alnParams">
<caption class="hdnHeader">Alignment statistics for match #3</caption>
<tbody><tr>
<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
</tr>
<tr>
<td>14.4 bits(7)</td>
<td>  186<span class="sumN ">()</span></td>
<td>7/7(100%)</td>
<td>0/7(0%)</td>
<td>Plus/Plus</td>
<td class="aln_frame "></td>
</tr></tbody></table>
<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
</div>
<div id="ar_557804227_3">
<pre>Query  7    TCGTGAA  13
            |||||||
Sbjct  839  TCGTGAA  845


</pre>
</div>
<div id="hd_557804227_4">
<div class="dflLnk hsp"><span class="alnRn"><label>Range 4: 2027 to 2033</label><span class="" id="rng_557804227"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&amp;log$=nuclalign&amp;blast_rank=5&amp;RID=PHWP1JNZ014&amp;from=2027&amp;to=2033" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2027 to 2033 on 3J52_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804227?report=graph&amp;rid=PHWP1JNZ014[557804227]&amp;tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&amp;v=2027:2033&amp;appname=ncbiblast&amp;link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J52_A in Nucleotide Graphics for 2027 to 2033 range">Graphics</a></span></span>
<span id="hsp557804227_4" class="alnParLinks">
<a class="gbd toolsCtr navNext" disabled="disabled" title="Go to next match #5 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=4&amp;currseq=557804227" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
<a init="on" class="gbd toolsCtr navPrev" title="Go to previous match #3 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=4&amp;currseq=557804227" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
<a class="gbd toolsCtr navBack " href="#hsp557804227_1" title="Go to first match for pdb|3J52|A"><span>First Match</span></a>
</span>
</div>
<table class="alnParams">
<caption class="hdnHeader">Alignment statistics for match #4</caption>
<tbody><tr>
<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
</tr>
<tr>
<td>14.4 bits(7)</td>
<td>  186<span class="sumN ">()</span></td>
<td>7/7(100%)</td>
<td>0/7(0%)</td>
<td>Plus/Plus</td>
<td class="aln_frame "></td>
</tr></tbody></table>
<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
</div>
<div id="ar_557804227_4">
<pre>Query  9     GTGAAGA  15
             |||||||
Sbjct  2027  GTGAAGA  2033


</pre>
</div>
</div> <!-- alnAll_557804227 -->
</div> <!-- aln_557804227 -->
</form>

</div></div> 
<pre></pre>
</div><!--/#alignments-->
</div><!-- alignInfo -->
</div><!--ARIA-->

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