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view test-data/blast xml example4.html @ 97:8b3c5d334a84

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update tests
author Jan Kanis <jan.code@jankanis.nl>
date Mon, 30 Jun 2014 17:31:26 +0200
parents 05500bdd7376
children e780606b7c25
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<!DOCTYPE html>
<html>
  <head>
    <meta charset="UTF-8">
    <meta name=generator content="blast2html; see https://github.com/thehyve/blast2html/">
    
    <title>Blast output</title>
    
    <style>
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  </head>

  
  <body>
    
    <div id="strip_html_warning">
      <!-- This div should be hidden by the header css block. Galaxy
      strips all css, breaking this page but making this warning
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      layout that is not stripped. -->
      <table bgcolor="#FFE5C9"><tr><td><font color="red"><b>
                <font size=5><center>This html page seems to have been stripped by Galaxy.</center></font>
                Disable Galaxy's html sanitization feature to view the full page (see <font face=monospace>sanitize_all_html</font> in your galaxy's universe_wsgi.ini), or download this page instead of viewing it in Galaxy.
      </b></font></td></tr></table>
    </div>
    
    <div id=content>


      <section class=index>
        <h1>Queries</h1>

        <div class=indexentry><a href="#match1">
            Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
            (20 letters, 2 hits)
        </a></div>
        <div class=indexentry><a href="#match2">
            Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
            (20 letters, 0 hits)
        </a></div>
        <div class=indexentry><a href="#match3">
            Query_3: Probe|NOST-Spec_(Genetic_ID)
            (20 letters, 3 hits)
        </a></div>
        <div class=indexentry><a href="#match4">
            Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
            (24 letters, 0 hits)
        </a></div>
        <div class=indexentry><a href="#match5">
            Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
            (20 letters, 0 hits)
        </a></div>
        <div class=indexentry><a href="#match6">
            Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
            (25 letters, 2 hits)
        </a></div>
        <div class=indexentry><a href="#match7">
            Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
            (74 letters, 2 hits)
        </a></div>

      </section>

      
      <section class=match id=match1>
      
        <h1>Nucleotide Sequence (20 letters)</h1>

        <section class=header>

          <table class=headerdata>
            <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
            <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
            <tr><td class=param>Query length:</td><td>20</td></tr>
            <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
            <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
          </table>

        </section>


        <section class=graphics>
          <h2>Graphic Summary</h2>

          <div class=grey>
            <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3>

            <div class=defline id=defline1>
              Mouse-over to show defline and scores, click to show alignments
            </div>

            <div class=graphic>
              <h4 class=darkHeader>Color key for alignment scores</h4>
              <div class=legend><div class=graphicrow>
                  <div class=graphicitem style="background-color: black">&lt;40</div>
                  <div class=graphicitem style="background-color: blue">40–50</div>
                  <div class=graphicitem style="background-color: green">50–80</div>
                  <div class=graphicitem style="background-color: magenta">80–200</div>
                  <div class=graphicitem style="background-color: red">200≤</div>
              </div></div>
              <div style="clear: left"></div>

              <div class=tablewrapper>

                <div class=scale>
                  <div>query:</div>
                  <div class=graphicrow>
                    <div>
                      <div class=graphicitem style="width: 10%">
                        <div>2</div>
                      </div>
                      <div class=graphicitem style="width: 10%">
                        <div>4</div>
                      </div>
                      <div class=graphicitem style="width: 10%">
                        <div>6</div>
                      </div>
                      <div class=graphicitem style="width: 10%">
                        <div>8</div>
                      </div>
                      <div class=graphicitem style="width: 10%">
                        <div>10</div>
                      </div>
                      <div class=graphicitem style="width: 10%">
                        <div>12</div>
                      </div>
                      <div class=graphicitem style="width: 10%">
                        <div>14</div>
                      </div>
                      <div class=graphicitem style="width: 10%">
                        <div>16</div>
                      </div>
                      <div class=graphicitem style="width: 10%">
                        <div>18</div>
                      </div>
                      <div class=graphicitem style="width: 10%">
                        <div>20</div>
                      </div>
                    </div>
                  </div>
                  <div style="clear: left"></div>
                </div>

                <a class=matchresult
                   href="#hit1-1"
                   onmouseover='document.getElementById("defline1").innerHTML="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"'
                   onmouseout='document.getElementById("defline1").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
                   title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000">
                  <div class="matchrow graphicrow">
                    <div class="matchitem graphicitem"
                         style="background-color: black; width: 100%"></div>
                  </div>
                </a>

                <a class=matchresult
                   href="#hit1-2"
                   onmouseover='document.getElementById("defline1").innerHTML="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"'
                   onmouseout='document.getElementById("defline1").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
                   title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000">
                  <div class="matchrow graphicrow">
                    <div class="matchitem graphicitem"
                         style="background-color: black; width: 100%"></div>
                  </div>
                </a>

              </div>
            </div>
          </div>
        </section>



        <section class=descriptions>
          <h2>Descriptions</h2>

          <div class=grey><div class=white>
              <h4 class=darkHeader>Sequences producing significant alignments:</h4>

              <table class=descriptiontable>
                <col/><col/><col/><col/><col/><col/><col/>
                <tr>
                  <th>Description</th>
                  <th>Max score</th>
                  <th>Total score</th>
                  <th>Query cover</th>
                  <th>E value</th>
                  <th>Ident</th>
                  <th>Accession</th>
                </tr>
                <tr>
                  <td><div><a href="#hit1-1"
                              title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"
                              id="description1-1">
                        AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000
                  </a></div></td>
                  <td>40.1</td>
                  <td>40.1</td>
                  <td>100%</td>
                  <td>1.513e-07</td>
                  <td>100%</td>
                  <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&amp;log$=nuclalign">5</a></td>
                </tr>
                <tr>
                  <td><div><a href="#hit1-2"
                              title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"
                              id="description1-2">
                        DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000
                  </a></div></td>
                  <td>40.1</td>
                  <td>40.1</td>
                  <td>100%</td>
                  <td>1.513e-07</td>
                  <td>100%</td>
                  <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&amp;log$=nuclalign">2</a></td>
                </tr>
              </table>

          </div></div>
        </section>



        <section class=alignments>
          <h2>Alignments</h2>

          <div class=grey><div class=white>
              <div class=alignment id=hit1-1>

                <div class=linkheader>
                  <div class=right><a href="#description1-1">Descriptions</a></div>
                  <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&amp;log$=nuclalign">Gene Bank</a>
                </div>

                <div class=title>
                  <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
                  <p class=titleinfo>
                    <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|5</a>
                    <span class=b>Length:</span> 2457
                    <span class=b>Number of Matches:</span> 1
                  </p>
                </div>


                <div class=hotspot id=hotspot1-1-1>
                  <p class=range>
                    <span class=range>Range 1: 2119 to 2138</span>
                  </p>

                  <table class=hotspotstable>
                    <tr>
                      <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
                    </tr>
                    <tr>
                      <td>40.1 bits(20)</td>
                      <td>0.0</td>
                      <td>20/20(100%)</td>
                      <td>0/20(0%)</td>
                      <td>Plus/Plus</td>
                    </tr>
                  </table>

                  <pre class=alignmentgraphic>Query        1  AGCGCGCAAACTAGGATAAA  20
                ||||||||||||||||||||
Subject   2119  AGCGCGCAAACTAGGATAAA  2138</pre>
                </div>

              </div>

              <div class=alignment id=hit1-2>

                <div class=linkheader>
                  <div class=right><a href="#description1-2">Descriptions</a></div>
                  <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&amp;log$=nuclalign">Gene Bank</a>
                </div>

                <div class=title>
                  <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
                  <p class=titleinfo>
                    <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|2</a>
                    <span class=b>Length:</span> 323
                    <span class=b>Number of Matches:</span> 1
                  </p>
                </div>


                <div class=hotspot id=hotspot1-2-1>
                  <p class=range>
                    <span class=range>Range 1: 200 to 219</span>
                  </p>

                  <table class=hotspotstable>
                    <tr>
                      <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
                    </tr>
                    <tr>
                      <td>40.1 bits(20)</td>
                      <td>0.0</td>
                      <td>20/20(100%)</td>
                      <td>0/20(0%)</td>
                      <td>Plus/Plus</td>
                    </tr>
                  </table>

                  <pre class=alignmentgraphic>Query        1  AGCGCGCAAACTAGGATAAA  20
                ||||||||||||||||||||
Subject    200  AGCGCGCAAACTAGGATAAA  219</pre>
                </div>

              </div>

          </div></div>
        </section>
      </section>
      
      <section class=match id=match2>
      
        <h1>Nucleotide Sequence (20 letters)</h1>

        <section class=header>

          <table class=headerdata>
            <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
            <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
            <tr><td class=param>Query length:</td><td>20</td></tr>
            <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
            <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
          </table>

        </section>

        <section>
          <h2>No Hits</h2>
          <div class=grey>
            <table class=headerdata>
              <tr><td class=param>Message:</td><td>No hits found</td></tr>
            </table>
          </div>
        </section>
      </section>
      
      <section class=match id=match3>
      
        <h1>Nucleotide Sequence (20 letters)</h1>

        <section class=header>

          <table class=headerdata>
            <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
            <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
            <tr><td class=param>Query length:</td><td>20</td></tr>
            <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
            <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
          </table>

        </section>


        <section class=graphics>
          <h2>Graphic Summary</h2>

          <div class=grey>
            <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3>

            <div class=defline id=defline3>
              Mouse-over to show defline and scores, click to show alignments
            </div>

            <div class=graphic>
              <h4 class=darkHeader>Color key for alignment scores</h4>
              <div class=legend><div class=graphicrow>
                  <div class=graphicitem style="background-color: black">&lt;40</div>
                  <div class=graphicitem style="background-color: blue">40–50</div>
                  <div class=graphicitem style="background-color: green">50–80</div>
                  <div class=graphicitem style="background-color: magenta">80–200</div>
                  <div class=graphicitem style="background-color: red">200≤</div>
              </div></div>
              <div style="clear: left"></div>

              <div class=tablewrapper>

                <div class=scale>
                  <div>query:</div>
                  <div class=graphicrow>
                    <div>
                      <div class=graphicitem style="width: 10%">
                        <div>2</div>
                      </div>
                      <div class=graphicitem style="width: 10%">
                        <div>4</div>
                      </div>
                      <div class=graphicitem style="width: 10%">
                        <div>6</div>
                      </div>
                      <div class=graphicitem style="width: 10%">
                        <div>8</div>
                      </div>
                      <div class=graphicitem style="width: 10%">
                        <div>10</div>
                      </div>
                      <div class=graphicitem style="width: 10%">
                        <div>12</div>
                      </div>
                      <div class=graphicitem style="width: 10%">
                        <div>14</div>
                      </div>
                      <div class=graphicitem style="width: 10%">
                        <div>16</div>
                      </div>
                      <div class=graphicitem style="width: 10%">
                        <div>18</div>
                      </div>
                      <div class=graphicitem style="width: 10%">
                        <div>20</div>
                      </div>
                    </div>
                  </div>
                  <div style="clear: left"></div>
                </div>

                <a class=matchresult
                   href="#hit3-1"
                   onmouseover='document.getElementById("defline3").innerHTML="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"'
                   onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
                   title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000">
                  <div class="matchrow graphicrow">
                    <div class="matchitem graphicitem"
                         style="background-color: black; width: 100%"></div>
                  </div>
                </a>

                <a class=matchresult
                   href="#hit3-2"
                   onmouseover='document.getElementById("defline3").innerHTML="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"'
                   onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
                   title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000">
                  <div class="matchrow graphicrow">
                    <div class="matchitem graphicitem"
                         style="background-color: black; width: 100%"></div>
                  </div>
                </a>

                <a class=matchresult
                   href="#hit3-3"
                   onmouseover='document.getElementById("defline3").innerHTML="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3\u0027UTR/plant_junction_region.|-9105899556052450000"'
                   onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
                   title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000">
                  <div class="matchrow graphicrow">
                    <div class="matchitem graphicitem"
                         style="background-color: transparent; width: 15%"></div>
                    <div class="matchitem graphicitem"
                         style="background-color: black; width: 85%"></div>
                  </div>
                </a>

              </div>
            </div>
          </div>
        </section>



        <section class=descriptions>
          <h2>Descriptions</h2>

          <div class=grey><div class=white>
              <h4 class=darkHeader>Sequences producing significant alignments:</h4>

              <table class=descriptiontable>
                <col/><col/><col/><col/><col/><col/><col/>
                <tr>
                  <th>Description</th>
                  <th>Max score</th>
                  <th>Total score</th>
                  <th>Query cover</th>
                  <th>E value</th>
                  <th>Ident</th>
                  <th>Accession</th>
                </tr>
                <tr>
                  <td><div><a href="#hit3-1"
                              title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"
                              id="description3-1">
                        AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000
                  </a></div></td>
                  <td>40.1</td>
                  <td>40.1</td>
                  <td>100%</td>
                  <td>1.513e-07</td>
                  <td>100%</td>
                  <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&amp;log$=nuclalign">5</a></td>
                </tr>
                <tr>
                  <td><div><a href="#hit3-2"
                              title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"
                              id="description3-2">
                        DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000
                  </a></div></td>
                  <td>40.1</td>
                  <td>40.1</td>
                  <td>100%</td>
                  <td>1.513e-07</td>
                  <td>100%</td>
                  <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&amp;log$=nuclalign">2</a></td>
                </tr>
                <tr>
                  <td><div><a href="#hit3-3"
                              title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000"
                              id="description3-3">
                        AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000
                  </a></div></td>
                  <td>34.2</td>
                  <td>34.2</td>
                  <td>85%</td>
                  <td>9.334e-06</td>
                  <td>100%</td>
                  <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/1?report=genbank&amp;log$=nuclalign">1</a></td>
                </tr>
              </table>

          </div></div>
        </section>



        <section class=alignments>
          <h2>Alignments</h2>

          <div class=grey><div class=white>
              <div class=alignment id=hit3-1>

                <div class=linkheader>
                  <div class=right><a href="#description3-1">Descriptions</a></div>
                  <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&amp;log$=nuclalign">Gene Bank</a>
                </div>

                <div class=title>
                  <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
                  <p class=titleinfo>
                    <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|5</a>
                    <span class=b>Length:</span> 2457
                    <span class=b>Number of Matches:</span> 1
                  </p>
                </div>


                <div class=hotspot id=hotspot3-1-1>
                  <p class=range>
                    <span class=range>Range 1: 2143 to 2162</span>
                  </p>

                  <table class=hotspotstable>
                    <tr>
                      <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
                    </tr>
                    <tr>
                      <td>40.1 bits(20)</td>
                      <td>0.0</td>
                      <td>20/20(100%)</td>
                      <td>0/20(0%)</td>
                      <td>Plus/Plus</td>
                    </tr>
                  </table>

                  <pre class=alignmentgraphic>Query        1  CGCGCGCGGTGTCATCTATG  20
                ||||||||||||||||||||
Subject   2143  CGCGCGCGGTGTCATCTATG  2162</pre>
                </div>

              </div>

              <div class=alignment id=hit3-2>

                <div class=linkheader>
                  <div class=right><a href="#description3-2">Descriptions</a></div>
                  <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&amp;log$=nuclalign">Gene Bank</a>
                </div>

                <div class=title>
                  <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
                  <p class=titleinfo>
                    <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|2</a>
                    <span class=b>Length:</span> 323
                    <span class=b>Number of Matches:</span> 1
                  </p>
                </div>


                <div class=hotspot id=hotspot3-2-1>
                  <p class=range>
                    <span class=range>Range 1: 224 to 243</span>
                  </p>

                  <table class=hotspotstable>
                    <tr>
                      <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
                    </tr>
                    <tr>
                      <td>40.1 bits(20)</td>
                      <td>0.0</td>
                      <td>20/20(100%)</td>
                      <td>0/20(0%)</td>
                      <td>Plus/Plus</td>
                    </tr>
                  </table>

                  <pre class=alignmentgraphic>Query        1  CGCGCGCGGTGTCATCTATG  20
                ||||||||||||||||||||
Subject    224  CGCGCGCGGTGTCATCTATG  243</pre>
                </div>

              </div>

              <div class=alignment id=hit3-3>

                <div class=linkheader>
                  <div class=right><a href="#description3-3">Descriptions</a></div>
                  <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/1?report=genbank&amp;log$=nuclalign">Gene Bank</a>
                </div>

                <div class=title>
                  <p class=hittitle>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000</p>
                  <p class=titleinfo>
                    <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/1?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|1</a>
                    <span class=b>Length:</span> 1045
                    <span class=b>Number of Matches:</span> 1
                  </p>
                </div>


                <div class=hotspot id=hotspot3-3-1>
                  <p class=range>
                    <span class=range>Range 1: 2 to 18</span>
                  </p>

                  <table class=hotspotstable>
                    <tr>
                      <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
                    </tr>
                    <tr>
                      <td>34.2 bits(17)</td>
                      <td>0.0</td>
                      <td>17/17(100%)</td>
                      <td>0/17(0%)</td>
                      <td>Plus/Plus</td>
                    </tr>
                  </table>

                  <pre class=alignmentgraphic>Query        4  GCGCGGTGTCATCTATG  20
                |||||||||||||||||
Subject      2  GCGCGGTGTCATCTATG  18</pre>
                </div>

              </div>

          </div></div>
        </section>
      </section>
      
      <section class=match id=match4>
      
        <h1>Nucleotide Sequence (24 letters)</h1>

        <section class=header>

          <table class=headerdata>
            <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
            <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
            <tr><td class=param>Query length:</td><td>20</td></tr>
            <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
            <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
          </table>

        </section>

        <section>
          <h2>No Hits</h2>
          <div class=grey>
            <table class=headerdata>
              <tr><td class=param>Message:</td><td>No hits found</td></tr>
            </table>
          </div>
        </section>
      </section>
      
      <section class=match id=match5>
      
        <h1>Nucleotide Sequence (20 letters)</h1>

        <section class=header>

          <table class=headerdata>
            <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
            <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
            <tr><td class=param>Query length:</td><td>20</td></tr>
            <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
            <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
          </table>

        </section>

        <section>
          <h2>No Hits</h2>
          <div class=grey>
            <table class=headerdata>
              <tr><td class=param>Message:</td><td>No hits found</td></tr>
            </table>
          </div>
        </section>
      </section>
      
      <section class=match id=match6>
      
        <h1>Nucleotide Sequence (25 letters)</h1>

        <section class=header>

          <table class=headerdata>
            <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
            <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
            <tr><td class=param>Query length:</td><td>20</td></tr>
            <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
            <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
          </table>

        </section>


        <section class=graphics>
          <h2>Graphic Summary</h2>

          <div class=grey>
            <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3>

            <div class=defline id=defline6>
              Mouse-over to show defline and scores, click to show alignments
            </div>

            <div class=graphic>
              <h4 class=darkHeader>Color key for alignment scores</h4>
              <div class=legend><div class=graphicrow>
                  <div class=graphicitem style="background-color: black">&lt;40</div>
                  <div class=graphicitem style="background-color: blue">40–50</div>
                  <div class=graphicitem style="background-color: green">50–80</div>
                  <div class=graphicitem style="background-color: magenta">80–200</div>
                  <div class=graphicitem style="background-color: red">200≤</div>
              </div></div>
              <div style="clear: left"></div>

              <div class=tablewrapper>

                <div class=scale>
                  <div>query:</div>
                  <div class=graphicrow>
                    <div>
                      <div class=graphicitem style="width: 12%">
                        <div>3</div>
                      </div>
                      <div class=graphicitem style="width: 12%">
                        <div>6</div>
                      </div>
                      <div class=graphicitem style="width: 12%">
                        <div>9</div>
                      </div>
                      <div class=graphicitem style="width: 12%">
                        <div>12</div>
                      </div>
                      <div class=graphicitem style="width: 12%">
                        <div>15</div>
                      </div>
                      <div class=graphicitem style="width: 12%">
                        <div>18</div>
                      </div>
                      <div class=graphicitem style="width: 12%">
                        <div>21</div>
                      </div>
                      <div class=graphicitem style="width: 12%">
                        <div>24</div>
                      </div>
                      <div class=graphicitem style="width: 4%">
                        <div>25</div>
                      </div>
                    </div>
                  </div>
                  <div style="clear: left"></div>
                </div>

                <a class=matchresult
                   href="#hit6-1"
                   onmouseover='document.getElementById("defline6").innerHTML="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"'
                   onmouseout='document.getElementById("defline6").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
                   title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000">
                  <div class="matchrow graphicrow">
                    <div class="matchitem graphicitem"
                         style="background-color: black; width: 88%"></div>
                    <div class="matchitem graphicitem"
                         style="background-color: transparent; width: 12%"></div>
                  </div>
                </a>

                <a class=matchresult
                   href="#hit6-2"
                   onmouseover='document.getElementById("defline6").innerHTML="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"'
                   onmouseout='document.getElementById("defline6").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
                   title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000">
                  <div class="matchrow graphicrow">
                    <div class="matchitem graphicitem"
                         style="background-color: black; width: 88%"></div>
                    <div class="matchitem graphicitem"
                         style="background-color: transparent; width: 12%"></div>
                  </div>
                </a>

              </div>
            </div>
          </div>
        </section>



        <section class=descriptions>
          <h2>Descriptions</h2>

          <div class=grey><div class=white>
              <h4 class=darkHeader>Sequences producing significant alignments:</h4>

              <table class=descriptiontable>
                <col/><col/><col/><col/><col/><col/><col/>
                <tr>
                  <th>Description</th>
                  <th>Max score</th>
                  <th>Total score</th>
                  <th>Query cover</th>
                  <th>E value</th>
                  <th>Ident</th>
                  <th>Accession</th>
                </tr>
                <tr>
                  <td><div><a href="#hit6-1"
                              title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"
                              id="description6-1">
                        EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000
                  </a></div></td>
                  <td>36.2</td>
                  <td>36.2</td>
                  <td>88%</td>
                  <td>3.148e-06</td>
                  <td>95%</td>
                  <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&amp;log$=nuclalign">7</a></td>
                </tr>
                <tr>
                  <td><div><a href="#hit6-2"
                              title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"
                              id="description6-2">
                        AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000
                  </a></div></td>
                  <td>36.2</td>
                  <td>36.2</td>
                  <td>88%</td>
                  <td>3.148e-06</td>
                  <td>95%</td>
                  <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&amp;log$=nuclalign">6</a></td>
                </tr>
              </table>

          </div></div>
        </section>



        <section class=alignments>
          <h2>Alignments</h2>

          <div class=grey><div class=white>
              <div class=alignment id=hit6-1>

                <div class=linkheader>
                  <div class=right><a href="#description6-1">Descriptions</a></div>
                  <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&amp;log$=nuclalign">Gene Bank</a>
                </div>

                <div class=title>
                  <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
                  <p class=titleinfo>
                    <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|7</a>
                    <span class=b>Length:</span> 4983
                    <span class=b>Number of Matches:</span> 1
                  </p>
                </div>


                <div class=hotspot id=hotspot6-1-1>
                  <p class=range>
                    <span class=range>Range 1: 2344 to 2365</span>
                  </p>

                  <table class=hotspotstable>
                    <tr>
                      <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
                    </tr>
                    <tr>
                      <td>36.2 bits(18)</td>
                      <td>0.0</td>
                      <td>21/22(95%)</td>
                      <td>0/22(0%)</td>
                      <td>Plus/Plus</td>
                    </tr>
                  </table>

                  <pre class=alignmentgraphic>Query        1  ACATGAACAGCGCCTTGACCAC  22
                |||||||||||||| |||||||
Subject   2344  ACATGAACAGCGCCCTGACCAC  2365</pre>
                </div>

              </div>

              <div class=alignment id=hit6-2>

                <div class=linkheader>
                  <div class=right><a href="#description6-2">Descriptions</a></div>
                  <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&amp;log$=nuclalign">Gene Bank</a>
                </div>

                <div class=title>
                  <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
                  <p class=titleinfo>
                    <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|6</a>
                    <span class=b>Length:</span> 4180
                    <span class=b>Number of Matches:</span> 1
                  </p>
                </div>


                <div class=hotspot id=hotspot6-2-1>
                  <p class=range>
                    <span class=range>Range 1: 1541 to 1562</span>
                  </p>

                  <table class=hotspotstable>
                    <tr>
                      <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
                    </tr>
                    <tr>
                      <td>36.2 bits(18)</td>
                      <td>0.0</td>
                      <td>21/22(95%)</td>
                      <td>0/22(0%)</td>
                      <td>Plus/Plus</td>
                    </tr>
                  </table>

                  <pre class=alignmentgraphic>Query        1  ACATGAACAGCGCCTTGACCAC  22
                |||||||||||||| |||||||
Subject   1541  ACATGAACAGCGCCCTGACCAC  1562</pre>
                </div>

              </div>

          </div></div>
        </section>
      </section>
      
      <section class=match id=match7>
      
        <h1>Nucleotide Sequence (74 letters)</h1>

        <section class=header>

          <table class=headerdata>
            <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
            <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
            <tr><td class=param>Query length:</td><td>20</td></tr>
            <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
            <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
          </table>

        </section>


        <section class=graphics>
          <h2>Graphic Summary</h2>

          <div class=grey>
            <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3>

            <div class=defline id=defline7>
              Mouse-over to show defline and scores, click to show alignments
            </div>

            <div class=graphic>
              <h4 class=darkHeader>Color key for alignment scores</h4>
              <div class=legend><div class=graphicrow>
                  <div class=graphicitem style="background-color: black">&lt;40</div>
                  <div class=graphicitem style="background-color: blue">40–50</div>
                  <div class=graphicitem style="background-color: green">50–80</div>
                  <div class=graphicitem style="background-color: magenta">80–200</div>
                  <div class=graphicitem style="background-color: red">200≤</div>
              </div></div>
              <div style="clear: left"></div>

              <div class=tablewrapper>

                <div class=scale>
                  <div>query:</div>
                  <div class=graphicrow>
                    <div>
                      <div class=graphicitem style="width: 10.8108108108%">
                        <div>8</div>
                      </div>
                      <div class=graphicitem style="width: 10.8108108108%">
                        <div>16</div>
                      </div>
                      <div class=graphicitem style="width: 10.8108108108%">
                        <div>24</div>
                      </div>
                      <div class=graphicitem style="width: 10.8108108108%">
                        <div>32</div>
                      </div>
                      <div class=graphicitem style="width: 10.8108108108%">
                        <div>40</div>
                      </div>
                      <div class=graphicitem style="width: 10.8108108108%">
                        <div>48</div>
                      </div>
                      <div class=graphicitem style="width: 10.8108108108%">
                        <div>56</div>
                      </div>
                      <div class=graphicitem style="width: 10.8108108108%">
                        <div>64</div>
                      </div>
                      <div class=graphicitem style="width: 10.8108108108%">
                        <div>72</div>
                      </div>
                      <div class=graphicitem style="width: 2.7027027027%">
                        <div>&nbsp;</div>
                        <div class=lastlabel>74</div>
                      </div>
                    </div>
                  </div>
                  <div style="clear: left"></div>
                </div>

                <a class=matchresult
                   href="#hit7-1"
                   onmouseover='document.getElementById("defline7").innerHTML="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"'
                   onmouseout='document.getElementById("defline7").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
                   title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000">
                  <div class="matchrow graphicrow">
                    <div class="matchitem graphicitem"
                         style="background-color: green; width: 100%"></div>
                  </div>
                </a>

                <a class=matchresult
                   href="#hit7-2"
                   onmouseover='document.getElementById("defline7").innerHTML="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"'
                   onmouseout='document.getElementById("defline7").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
                   title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000">
                  <div class="matchrow graphicrow">
                    <div class="matchitem graphicitem"
                         style="background-color: green; width: 100%"></div>
                  </div>
                </a>

              </div>
            </div>
          </div>
        </section>



        <section class=descriptions>
          <h2>Descriptions</h2>

          <div class=grey><div class=white>
              <h4 class=darkHeader>Sequences producing significant alignments:</h4>

              <table class=descriptiontable>
                <col/><col/><col/><col/><col/><col/><col/>
                <tr>
                  <th>Description</th>
                  <th>Max score</th>
                  <th>Total score</th>
                  <th>Query cover</th>
                  <th>E value</th>
                  <th>Ident</th>
                  <th>Accession</th>
                </tr>
                <tr>
                  <td><div><a href="#hit7-1"
                              title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"
                              id="description7-1">
                        EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000
                  </a></div></td>
                  <td>67.9</td>
                  <td>67.9</td>
                  <td>100%</td>
                  <td>3.564e-15</td>
                  <td>86%</td>
                  <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&amp;log$=nuclalign">7</a></td>
                </tr>
                <tr>
                  <td><div><a href="#hit7-2"
                              title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"
                              id="description7-2">
                        AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000
                  </a></div></td>
                  <td>67.9</td>
                  <td>67.9</td>
                  <td>100%</td>
                  <td>3.564e-15</td>
                  <td>86%</td>
                  <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&amp;log$=nuclalign">6</a></td>
                </tr>
              </table>

          </div></div>
        </section>



        <section class=alignments>
          <h2>Alignments</h2>

          <div class=grey><div class=white>
              <div class=alignment id=hit7-1>

                <div class=linkheader>
                  <div class=right><a href="#description7-1">Descriptions</a></div>
                  <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&amp;log$=nuclalign">Gene Bank</a>
                </div>

                <div class=title>
                  <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
                  <p class=titleinfo>
                    <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|7</a>
                    <span class=b>Length:</span> 4983
                    <span class=b>Number of Matches:</span> 1
                  </p>
                </div>


                <div class=hotspot id=hotspot7-1-1>
                  <p class=range>
                    <span class=range>Range 1: 2319 to 2392</span>
                  </p>

                  <table class=hotspotstable>
                    <tr>
                      <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
                    </tr>
                    <tr>
                      <td>67.9 bits(34)</td>
                      <td>0.0</td>
                      <td>64/74(86%)</td>
                      <td>0/74(0%)</td>
                      <td>Plus/Plus</td>
                    </tr>
                  </table>

                  <pre class=alignmentgraphic>Query        1  GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTG  60
                ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | 
Subject   2319  GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTC  2378</pre>
                  <pre class=alignmentgraphic>Query       61  TTCGCAGTCCAGAA  74
                ||||| ||||||||
Subject   2379  TTCGCCGTCCAGAA  2392</pre>
                </div>

              </div>

              <div class=alignment id=hit7-2>

                <div class=linkheader>
                  <div class=right><a href="#description7-2">Descriptions</a></div>
                  <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&amp;log$=nuclalign">Gene Bank</a>
                </div>

                <div class=title>
                  <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
                  <p class=titleinfo>
                    <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|6</a>
                    <span class=b>Length:</span> 4180
                    <span class=b>Number of Matches:</span> 1
                  </p>
                </div>


                <div class=hotspot id=hotspot7-2-1>
                  <p class=range>
                    <span class=range>Range 1: 1589 to 1516</span>
                  </p>

                  <table class=hotspotstable>
                    <tr>
                      <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
                    </tr>
                    <tr>
                      <td>67.9 bits(34)</td>
                      <td>0.0</td>
                      <td>64/74(86%)</td>
                      <td>0/74(0%)</td>
                      <td>Plus/Minus</td>
                    </tr>
                  </table>

                  <pre class=alignmentgraphic>Query        1  GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTG  60
                ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | 
Subject   1589  GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTC  1530</pre>
                  <pre class=alignmentgraphic>Query       61  TTCGCAGTCCAGAA  74
                ||||| ||||||||
Subject   1529  TTCGCCGTCCAGAA  1516</pre>
                </div>

              </div>

          </div></div>
        </section>
      </section>

    </div>

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