Mercurial > repos > jankanis > blast2html
view NCBI Blast reference example_files/blast.js @ 64:b68c04bf6912
work around missing ld library path for libxml
author | Jan Kanis <jan.code@jankanis.nl> |
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date | Tue, 03 Jun 2014 16:12:50 +0200 |
parents | 344cd76f6fd2 |
children |
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function printfire() { // Firefox if (document.createEvent && window.dispatchEvent) { printfire.args = arguments; var ev = document.createEvent("Events"); ev.initEvent("printfire", false, true); window.dispatchEvent(ev); } } //This functions handle setting defaults for protein or nulcleotide suite search page when //one of blast program radio buttons is clicked - not used now function AdjustMoreOptionsStyle() { var optsEl = document.getElementById("moreopts"); if(optsEl && optsEl.style.height != "0px") { optsEl.style.height = optsEl.scrollHeight + "px"; } } //Strip (taxid:XXX) from organism list selection //sgRunFunc="AdjustOrganism();" function AdjustOrganism() { var words = $("qorganism").value.split(" (taxid"); $("qorganism").value = words[0]; } /* JS Common to all BLAST pages */ function setResultsTarget() { //var newWin = $("newwin"); var newWin = this; var searchFrm = $(newWin.getAttribute("form")); if(newWin && newWin.checked == true) { if(newWin.getAttribute("winType") == "random") { searchFrm.target = "Blast_Results_for_" + Math.floor(Math.pow(10,10) *Math.random()); } else { searchFrm.target = $("resPageTarget").value; } } else { searchFrm.target = ""; } } function diffFromDefault(elem) { var currentVal = ""; var ret = 0; if (!(elem)) return; var defVal = elem.getAttribute("defVal"); //Default value var elShowDiff = utils.getParent(elem); if(!elem.type) {//div element for example //Check if parent elem has "hide" class if(utils.hasClass(utils.getParent(elem), "hide")) { currentVal = "hide"; } else { currentVal = "show"; } elShowDiff = elem; } else if(elem.type == "select-one") { if(elem[elem.selectedIndex].value) currentVal = elem[elem.selectedIndex].value; //If Default value is not specified - the first one in the selection list is the default if (!defVal && elem[0].value) defVal = elem[0].value; } else if(elem.type == "select-multiple") { currentVal = "";//for now } else if(elem.type == "checkbox") { //alert("defVal1=" + elem.id + " " + defVal); //var defVal = elem.defVal; //Default value //alert("defVal2=" + defVal); if(elem.checked == true) currentVal = "checked" else currentVal = "unchecked"; } else { currentVal = elem.value; } var numdiff = parseInt($("NUM_DIFFS").value,10); var optsNumDiff = parseInt($("NUM_OPTS_DIFFS").value,10); if(defVal != currentVal) { if(!utils.hasClass(elShowDiff, "nondef")) { utils.addClass(elShowDiff, "nondef"); numdiff++; if(utils.hasClass(elem,"opts")) optsNumDiff++; } ret = 1; } else { if(utils.hasClass(elShowDiff, "nondef")) { utils.removeClass(elShowDiff, "nondef"); //alert("noDiff-" + elem.id); if(numdiff != 0) numdiff--; if(utils.hasClass(elem,"opts")) optsNumDiff--; } ret=0; } $("NUM_DIFFS").value = numdiff; $("NUM_OPTS_DIFFS").value = optsNumDiff; if(numdiff > 0) { $("diffMes").style.display = "inline"; } else { $("diffMes").style.display = "none"; } //alert(elem.id + " " + $("NUM_DIFFS").value); return ret; } function setDefalValue(elem) { var currentVal; var defVal = elem.getAttribute("defVal"); //Default value if(elem.type == "select-one") { //If Default value is not specified - the first one in the selection list is the default if(!defVal) defVal = elem[0].value; for(j=0; j < elem.options.length; j++) { if(elem.options[j].value == defVal) { elem.options[j].selected = true; break; } } } else if(elem.type == "checkbox" || elem.type == "radio") { if(!defVal) defVal = "checked"; if(defVal == "checked") elem.checked = true else elem.checked = false; } else { if(!defVal) defVal = ""; elem.value = defVal; } var elShowDiff = utils.getParent(elem); if(utils.hasClass(elShowDiff, "nondef")) { utils.removeClass(elShowDiff, "nondef"); } //alert(elem.id + " " + $("NUM_DIFFS").value); } function newResultsWinInit() { jQuery("[class='newwin']").each(function(index) { utils.addEvent(this, "click", setResultsTarget, false); }); } function resetOrganismSuggest(orgEntryElem) { //suggestHint is in the hidden field used for SRA var defaultMessage = ($("suggestHint")) ? $("suggestHint").value : "Enter organism name or id--completions will be suggested"; var suggestHint = $("qorganism").getAttribute("suggestHint"); if(suggestHint) defaultMessage = suggestHint; if(orgEntryElem.value == "") { orgEntryElem.value = defaultMessage; } if(orgEntryElem.value == defaultMessage) { utils.addClass(orgEntryElem,"orgHint"); } } function setupOrganismSuggest(orgEntryElem) { resetOrganismSuggest(orgEntryElem); utils.addEvent(orgEntryElem, "focus", function() { clearOrgSuggest(orgEntryElem); }, false); } function clearOrgSuggest(orgEntryElem) { if(utils.hasClass(orgEntryElem,"orgHint")) { orgEntryElem.value=""; utils.removeClass(orgEntryElem,"orgHint"); } } function InitCustomButton(bn) { utils.addEvent(bn, "mouseover", function() {this.src = this.getAttribute("mouseovImg");}, false); utils.addEvent(bn, "mouseout", function() {this.src = this.getAttribute("mouseoutImg");}, false); utils.addEvent(bn, "mousedown", function() {this.src = this.getAttribute("mousedownImg");}, false); utils.addEvent(bn, "mouseup", function() {this.src = this.getAttribute("mouseupImg");}, false); } function showHideElem(id,hide) { if($(id)) { if(hide) { if(!utils.hasClass($(id),"hidden")) utils.addClass($(id), "hidden"); } else { if(utils.hasClass($(id),"hidden")) utils.removeClass($(id), "hidden"); } } } function resetOrganismControls(orgEntryElem) { resetOrganismSuggest(orgEntryElem); if ($("orgExcl")) $("orgExcl").checked = false; utils.replaceInHtml("", $("orgs")); if ($("frOrgs")) utils.replaceInHtml("", $("frOrgs")); if ($("numOrg")) $("numOrg").value = 1; } function AddOrgRow(e,orgName,exclName) { e = e || window.event; utils.preventDefault(e); var checkedExclude = new Array(); var orgDict = jQuery($($("qorganism"))).ncbiautocomplete("option","dictionary"); orgDict = (!orgDict || orgDict == "") ? "taxids_sg" : orgDict; var len = $("qorganism").getAttribute("size"); var newOrgFieldID = "qorganism" + $("numOrg").value; var newOrgField = " <div><input name=\"" + orgName + $("numOrg").value + "\" size=\"" + len + "\" id=\"" + newOrgFieldID + "\" type=\"text\" data-jigconfig=\"dictionary:'" + orgDict + "'\" autocomplete=\"off\" class=\"jig-ncbiautocomplete multiOrg\" />"; if (exclName != "") { newOrgField += "<span class=\"orgExcl\">" + "<input type=\"checkbox\" name=\"" + exclName + $("numOrg").value + "\" class=\"oExcl cb\" id=\"orgExcl" + $("numOrg").value + "\" />" + "<label for=\"orgExcl" + $("numOrg").value + "\" class=\"right oExclRl\">Exclude</label></span>"; } newOrgField += "</div>"; if (navigator.userAgent.match(/ie/i)) { for (i = 1; i < $("numOrg").value; i++) { if ($("orgExcl" + i)) checkedExclude[i] = $("orgExcl" + i).checked; } } if (!navigator.userAgent.match(/firefox/i)) { jQuery($($(orgs))).append(newOrgField,true); } else { utils.insertInHtml(newOrgField, $("orgs")); } if (navigator.userAgent.match(/ie/i)) { for (i = 1; i < $("numOrg").value; i++) { if ($("orgExcl" + i)) $("orgExcl" + i).checked = checkedExclude[i]; } } setupOrganismSuggest($(newOrgFieldID)); jQuery($($(newOrgFieldID))).ncbiautocomplete(); $("numOrg").value++; } function adjustOrgVal(orgEntryElem) { //if (utils.hasClass($("searchForm").EQ_MENU, "orgHint")) $("searchForm").EQ_MENU.value = ""; clearOrgSuggest(orgEntryElem); if ($("numOrg")) { for (i = 1; i < $("numOrg").value; i++) { if ($("qorganism" + i)) { clearOrgSuggest($("qorganism" + i)); } } } } function getUrlCompForEntryField(elem) { var url = ""; if (elem && elem.value != "") { url = "&" + elem.name + "=" + escape(elem.value); } return url; } function getUrlCompForCheckedField(elem) { var url = ""; if (elem && elem.checked) { url = "&" + elem.name + "=" + elem.value; } return url; } function getUrlCompForOptionsField(elem) { var url = ""; if (elem) { url = "&" + elem.name + "=" + elem[elem.selectedIndex].value; } return url; } function getUrlCompForMultiOptionsField(elem) { var url = ""; if (elem) { for (i = 0; i < elem.options.length; i++) { if (elem.options[i].selected) { url += "&" + elem.name + "=" + elem.options[i].value; } } } return url; } utils.addEvent(window, 'load', newResultsWinInit, false);