Mercurial > repos > jankanis > blast2html
view tool_dependencies.xml @ 78:c0804e6443c6 py2.6
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author | Jan Kanis <jan.code@jankanis.nl> |
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date | Thu, 19 Jun 2014 16:29:33 +0200 |
parents | c546e759bf2a |
children | 3338571b44cd |
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<?xml version="1.0"?> <tool_dependency> <package name="libxml2" version="2.9.1"> <repository name="package_libxml2_2_9_1" owner="jankanis" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="98807f0505f0" /> </package> <package name="libxslt" version="1.1.28"> <repository name="package_libxslt_1_1_28" owner="devteam" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="039b04adcfee" /> </package> <package name="python3" version="3.4.1"> <repository name="package_python3_4" owner="jankanis" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="d30e6a97dfbf" /> </package> <package name="blast2html_venv" version="0.1"> <install version="1.0"> <actions> <action type="set_environment_for_install"> <repository name="package_libxml2_2_9_1" owner="jankanis" toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="98807f0505f0"> <package name="libxml2" version="2.9.1" /> </repository> <repository name="package_libxslt_1_1_28" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="039b04adcfee"> <package name="libxslt" version="1.1.28" /> </repository> <repository name="package_python3_4" owner="jankanis" toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="d30e6a97dfbf"> <package name="python3" version="3.4.1" /> </repository> </action> <action type="shell_command"> # Unset any saved environment settings from parent virtual # environments, e.g. for python 2 or if Galaxy itself is running # from within a virtual environment. unset _OLD_VIRTUAL_PATH; unset _OLD_VIRTUAL_PYTHONHOME pyvenv blast2html_venv blast2html_venv/bin/pip3 install lxml jinja2 </action> <action type="set_environment"> <!-- Remove any incoming PYTHONPATH elements from Galaxy's own environment --> <environment_variable name="PYTHONPATH" action="set_to">$INSTALL_DIR/blast2html_venv/lib/python3.4/site-packages</environment_variable> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/blast2html_venv/bin</environment_variable> <environment_variable name="PYTHONHOME" action="set_to"></environment_variable> <!-- To find shared libraries such as libssl or libxml2 --> <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$ENV[LD_LIBRARY_PATH]</environment_variable> <!-- libxml2 doesn't actually export its own LD_LIBRARY_PATH --> <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$ENV[LIBXML_ROOT_PATH]/lib</environment_variable> </action> </actions> </install> <readme>A Python 3 virtual environment that includes the python packages blast2html depends on, which are lxml and jinja2.</readme> </package> </tool_dependency>