# HG changeset patch # User Jan Kanis # Date 1403180229 -7200 # Node ID 05500bdd73761c472761427e05e5b6466f8fd4e7 # Parent 7d0d46168fd539c85c1f9ae77d652f397c21ecd7 update test output diff -r 7d0d46168fd5 -r 05500bdd7376 test-data/blast xml example1.html --- a/test-data/blast xml example1.html Thu Jun 19 14:07:00 2014 +0200 +++ b/test-data/blast xml example1.html Thu Jun 19 14:17:09 2014 +0200 @@ -468,7 +468,7 @@ title="Chain A, E. Coli 70s-fmetval-trnaval Post-translocation Complex (post4, 50s Subunit)">
+ style="background-color: black; width: 100%">
@@ -479,7 +479,7 @@ title="Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Post- Translocation State (post3b, 50s Subunit)">
+ style="background-color: black; width: 100%">
@@ -490,7 +490,7 @@ title="Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Post- Translocation State (post3a, 50s Subunit)">
+ style="background-color: black; width: 100%">
@@ -501,7 +501,7 @@ title="Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Post- Translocation State (post2b, 50s Subunit)">
+ style="background-color: black; width: 100%">
@@ -512,7 +512,7 @@ title="Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Post- Translocation State (post2a, 50s Subunit)">
+ style="background-color: black; width: 100%">
@@ -523,7 +523,7 @@ title="Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Post- Translocation State (post1, 50s Subunit)">
+ style="background-color: black; width: 100%">
@@ -534,7 +534,7 @@ title="Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5b, 50s Subunit)">
+ style="background-color: black; width: 100%">
@@ -545,7 +545,7 @@ title="Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5a, 50s Subunit)">
+ style="background-color: black; width: 100%">
@@ -556,7 +556,7 @@ title="Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre4, 50s Subunit)">
+ style="background-color: black; width: 100%">
@@ -567,7 +567,7 @@ title="Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1a, 50s Subunit)">
+ style="background-color: black; width: 100%">
@@ -578,7 +578,7 @@ title="Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre3, 50s Subunit)">
+ style="background-color: black; width: 100%">
@@ -589,7 +589,7 @@ title="Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre2, 50s Subunit)">
+ style="background-color: black; width: 100%">
@@ -600,7 +600,7 @@ title="Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1b, 50s Subunit)">
+ style="background-color: black; width: 100%">
@@ -611,7 +611,7 @@ title="Chain A, Tetracycline Resistance Protein Tet(o) Bound To The Ribosome">
+ style="background-color: black; width: 100%">
@@ -622,7 +622,7 @@ title="Chain B, Structural Insights Into Cognate Vs. Near-Cognate Discrimination During Decoding. This Entry Contains The Large Subunit Of A Ribosome Programmed With A Near-Cognate Codon. ">
+ style="background-color: black; width: 100%">
@@ -633,7 +633,7 @@ title="Chain B, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. ">
+ style="background-color: black; width: 100%">
@@ -644,7 +644,7 @@ title="Chain B, Structure Of The 50s Subunit Of E. Coli Ribosome In Pre-Accommodation State ">
+ style="background-color: black; width: 100%">
@@ -655,7 +655,7 @@ title="Chain 0, Structure Of The 50s Subunit Of A Secm-Stalled E. Coli Ribosome Complex Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1143">
+ style="background-color: black; width: 100%">
@@ -666,7 +666,7 @@ title="Chain 0, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056">
+ style="background-color: black; width: 100%">
@@ -677,7 +677,7 @@ title="Chain B, Crystal Structure Of Ribosome With Messenger Rna And The Anticodon Stem-Loop Of P-Site Trna. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.">
+ style="background-color: black; width: 100%">
@@ -688,7 +688,7 @@ title="Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. ">
+ style="background-color: black; width: 100%">
@@ -699,7 +699,7 @@ title="Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. ">
+ style="background-color: black; width: 100%">
@@ -710,7 +710,7 @@ title="Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. ">
+ style="background-color: black; width: 100%">
@@ -721,7 +721,7 @@ title="Chain 0, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome ">
+ style="background-color: black; width: 100%">
@@ -827,7 +827,7 @@
+ style="background-color: black; width: 75%">
@@ -840,7 +840,7 @@ title="Chain 5, Structure Of The H. Sapiens 60s Rrna">
+ style="background-color: black; width: 100%">
@@ -851,7 +851,7 @@ title="Chain 5, Structure Of The D. Melanogaster 60s Rrna">
+ style="background-color: black; width: 100%">
@@ -879,7 +879,7 @@
+ style="background-color: transparent; width: 25%"> @@ -892,7 +892,7 @@
+ style="background-color: black; width: 75%">
@@ -933,7 +933,7 @@
+ style="background-color: black; width: 75%">
@@ -948,7 +948,7 @@
+ style="background-color: black; width: 75%">
@@ -963,7 +963,7 @@
+ style="background-color: black; width: 75%">
@@ -980,7 +980,7 @@
+ style="background-color: transparent; width: 25%"> @@ -995,7 +995,7 @@
+ style="background-color: transparent; width: 25%"> @@ -1088,7 +1088,7 @@
+ style="background-color: transparent; width: 25%"> @@ -1103,7 +1103,7 @@
+ style="background-color: transparent; width: 25%"> @@ -1118,7 +1118,7 @@
+ style="background-color: transparent; width: 25%"> @@ -1133,7 +1133,7 @@
+ style="background-color: transparent; width: 25%"> @@ -1146,7 +1146,7 @@
+ style="background-color: black; width: 75%">
@@ -1189,7 +1189,7 @@
+ style="background-color: transparent; width: 25%"> @@ -1204,7 +1204,7 @@
+ style="background-color: transparent; width: 25%"> @@ -1219,7 +1219,7 @@
+ style="background-color: transparent; width: 25%"> @@ -1232,7 +1232,7 @@
+ style="background-color: black; width: 75%">
@@ -1247,7 +1247,7 @@
+ style="background-color: black; width: 75%">
@@ -1262,7 +1262,7 @@
+ style="background-color: black; width: 75%">
@@ -1277,7 +1277,7 @@
+ style="background-color: black; width: 75%">
@@ -1292,7 +1292,7 @@
+ style="background-color: black; width: 75%">
@@ -1307,7 +1307,7 @@
+ style="background-color: black; width: 75%">
@@ -1322,7 +1322,7 @@
+ style="background-color: black; width: 75%">
@@ -1337,7 +1337,7 @@
+ style="background-color: black; width: 75%">
@@ -1352,7 +1352,7 @@
+ style="background-color: black; width: 75%">
@@ -1367,7 +1367,7 @@
+ style="background-color: black; width: 75%">
@@ -1382,7 +1382,7 @@
+ style="background-color: black; width: 75%">
@@ -1412,7 +1412,7 @@
+ style="background-color: transparent; width: 25%"> @@ -1440,7 +1440,7 @@
+ style="background-color: transparent; width: 25%"> @@ -1453,7 +1453,7 @@
+ style="background-color: black; width: 75%">
@@ -1468,7 +1468,7 @@
+ style="background-color: black; width: 75%">
@@ -1483,7 +1483,7 @@
+ style="background-color: black; width: 75%">
@@ -1500,7 +1500,7 @@
+ style="background-color: transparent; width: 25%"> @@ -1515,7 +1515,7 @@
+ style="background-color: transparent; width: 25%"> @@ -1530,7 +1530,7 @@
+ style="background-color: transparent; width: 25%"> @@ -1545,7 +1545,7 @@
+ style="background-color: transparent; width: 25%"> @@ -1560,7 +1560,7 @@
+ style="background-color: transparent; width: 25%"> @@ -1575,7 +1575,7 @@
+ style="background-color: transparent; width: 25%"> @@ -1586,11 +1586,11 @@ title="Chain F, Crystal Structure Of The Catalytic Domain Of Rlub In Complex With A 21-nucleotide Rna Substrate">
-
-
+ style="background-color: transparent; width: 25%">
+
+
@@ -1601,11 +1601,11 @@ title="Chain E, Crystal Structure Of The Catalytic Domain Of Rlub In Complex With A 21-nucleotide Rna Substrate">
-
-
+ style="background-color: transparent; width: 25%">
+
+
@@ -1616,7 +1616,7 @@ title="Chain A, Thermus Thermophilus Ribosome">
+ style="background-color: transparent; width: 25%">
+ style="background-color: transparent; width: 25%">
+ style="background-color: transparent; width: 25%">
+ style="background-color: transparent; width: 25%">
+ style="background-color: transparent; width: 25%">
+ style="background-color: transparent; width: 25%">
+ style="background-color: transparent; width: 25%">
-
-
+ style="background-color: transparent; width: 25%">
+
+
@@ -1766,7 +1766,7 @@
+ style="background-color: transparent; width: 25%">
@@ -1777,7 +1777,7 @@ title="Chain A, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. ">
+ style="background-color: transparent; width: 25%">
-
-
+ style="background-color: transparent; width: 25%">
+
+
@@ -1807,11 +1807,11 @@ title="Chain C, Crystal Structure Of I-Crei Complexed With Its Target Methylated At Position Plus 2 (In The B Strand) In The Presence Of Calcium">
-
-
+ style="background-color: transparent; width: 25%">
+
+
diff -r 7d0d46168fd5 -r 05500bdd7376 test-data/blast xml example3.html --- a/test-data/blast xml example3.html Thu Jun 19 14:07:00 2014 +0200 +++ b/test-data/blast xml example3.html Thu Jun 19 14:17:09 2014 +0200 @@ -713,34 +713,34 @@
query:
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@@ -755,7 +755,7 @@ title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000">
+ style="background-color: black; width: 100%">
@@ -952,34 +952,34 @@
query:
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@@ -994,7 +994,7 @@ title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000">
+ style="background-color: black; width: 100%">
@@ -1425,34 +1425,34 @@
query:
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@@ -1467,9 +1467,9 @@ title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000">
+ style="background-color: transparent; width: 15%">
+ style="background-color: black; width: 85%">
@@ -1614,34 +1614,34 @@
query:
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@@ -1656,7 +1656,7 @@ title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000">
+ style="background-color: black; width: 100%">
@@ -1853,34 +1853,34 @@
query:
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@@ -1895,7 +1895,7 @@ title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000">
+ style="background-color: black; width: 100%">
@@ -2664,31 +2664,31 @@
query:
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@@ -2703,7 +2703,7 @@ title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000">
+ style="background-color: black; width: 100%">
@@ -2848,31 +2848,31 @@
query:
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@@ -2887,7 +2887,7 @@ title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000">
+ style="background-color: black; width: 100%">
@@ -3188,34 +3188,34 @@
query:
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@@ -3231,7 +3231,7 @@ title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000">
+ style="background-color: green; width: 100%">
@@ -3379,34 +3379,34 @@
query:
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@@ -3422,7 +3422,7 @@ title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000">
+ style="background-color: green; width: 100%">
diff -r 7d0d46168fd5 -r 05500bdd7376 test-data/blast xml example4.html --- a/test-data/blast xml example4.html Thu Jun 19 14:07:00 2014 +0200 +++ b/test-data/blast xml example4.html Thu Jun 19 14:17:09 2014 +0200 @@ -465,34 +465,34 @@
query:
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@@ -507,7 +507,7 @@ title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000">
+ style="background-color: black; width: 100%">
@@ -518,7 +518,7 @@ title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000">
+ style="background-color: black; width: 100%">
@@ -747,34 +747,34 @@
query:
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@@ -789,7 +789,7 @@ title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000">
+ style="background-color: black; width: 100%">
@@ -800,7 +800,7 @@ title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000">
+ style="background-color: black; width: 100%">
@@ -811,9 +811,9 @@ title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000">
+ style="background-color: transparent; width: 15%">
+ style="background-color: black; width: 85%">
@@ -1126,31 +1126,31 @@
query:
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@@ -1165,9 +1165,9 @@ title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000">
+ style="background-color: black; width: 88%">
+ style="background-color: transparent; width: 12%">
@@ -1178,9 +1178,9 @@ title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000">
+ style="background-color: black; width: 88%">
+ style="background-color: transparent; width: 12%">
@@ -1383,34 +1383,34 @@
query:
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@@ -1426,7 +1426,7 @@ title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000">
+ style="background-color: green; width: 100%">
@@ -1437,7 +1437,7 @@ title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000">
+ style="background-color: green; width: 100%">
diff -r 7d0d46168fd5 -r 05500bdd7376 test-data/refresh_test_results.sh --- a/test-data/refresh_test_results.sh Thu Jun 19 14:07:00 2014 +0200 +++ b/test-data/refresh_test_results.sh Thu Jun 19 14:17:09 2014 +0200 @@ -2,7 +2,9 @@ # run this from the directory it exists in to update the test outputs +set -eu + for i in 1 2 3 4 do - ../blast2html.py -i "blast xml example$i.xml" -o "blast xml example$i.html" + "$@" ../blast2html.py -i "blast xml example$i.xml" -o "blast xml example$i.html" done