# HG changeset patch # User Jan Kanis # Date 1406804970 -7200 # Node ID 7f3f8c10f44b121de28c7aaf2f3b35d6f7697b60 # Parent 8ae71406968702039163d1ea3cf27b23994e3891 fix for Rikilt issues 8, 11, 12, 14 diff -r 8ae714069687 -r 7f3f8c10f44b blast2html.html.jinja --- a/blast2html.html.jinja Thu Jul 31 14:55:07 2014 +0200 +++ b/blast2html.html.jinja Thu Jul 31 13:09:30 2014 +0200 @@ -422,9 +422,8 @@ {% for result in blast.BlastOutput_iterations.Iteration %}
- {% set hits = result|hits %} {{result['Iteration_query-ID']}}: {{result['Iteration_query-def']}} - ({{result|len}} letters, {{hits|length}} hits) + ({{result|len}} letters, {{result|hits|length}} hits)
{% endfor %} @@ -476,7 +475,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -611,12 +610,12 @@ ScoreExpectIdentitiesGapsStrand - {{hsp['Hsp_bit-score']|fmt('.1f')}} bits({{hsp.Hsp_score}}) - {{hsp.Hsp_evalue|fmt('.1f')}} - {{ hsp.Hsp_identity }}/{{ hsp|len }}({{ + {{hsp['Hsp_bit-score']}} bits ({{hsp.Hsp_score}}) + {{hsp.Hsp_evalue}} + {{ hsp.Hsp_identity }}/{{ hsp|len }} ({{ ((hsp.Hsp_identity|float)/hsp|len) | fmt('.0%') }}) {{ hsp.Hsp_gaps }}/{{ hsp|len - }}({{ ((hsp.Hsp_gaps|float) / hsp|len) | fmt('.0%') }}) + }} ({{ ((hsp.Hsp_gaps|float) / hsp|len) | fmt('.0%') }}) {{ hsp['Hsp_query-frame']|asframe }}/{{ hsp['Hsp_hit-frame']|asframe }} diff -r 8ae714069687 -r 7f3f8c10f44b blast2html.py --- a/blast2html.py Thu Jul 31 14:55:07 2014 +0200 +++ b/blast2html.py Thu Jul 31 13:09:30 2014 +0200 @@ -342,7 +342,7 @@ maxscore = "{0:.1f}".format(max(hsp_val('Hsp_bit-score'))), totalscore = "{0:.1f}".format(sum(hsp_val('Hsp_bit-score'))), cover = "{0:.0%}".format(cover_count / query_length), - e_value = "{0:.4g}".format(min(hsp_val('Hsp_evalue'))), + e_value = "{0:.4}".format(float(min(hsp_val('Hsp_evalue')))), # FIXME: is this the correct formula vv? # float(...) because non-flooring division doesn't work with lxml elements in python 2.6 ident = "{0:.0%}".format(float(min(float(hsp.Hsp_identity) / blastxml_len(hsp) for hsp in hsps)))) @@ -383,7 +383,7 @@ return text if display_nolink else '' classattr = 'class="{0}" '.format(jinja2.escape(cssclass)) if cssclass is not None else '' - return jinja2.Markup("{2}".format(classattr, jinja2.escape(link), jinja2.escape(text))) + return jinja2.Markup("{2}".format(classattr, jinja2.escape(link), jinja2.escape(text))) genelinks_entry = namedtuple('genelinks_entry', 'dbname template') diff -r 8ae714069687 -r 7f3f8c10f44b test-data/blast xml example1.html --- a/test-data/blast xml example1.html Thu Jul 31 14:55:07 2014 +0200 +++ b/test-data/blast xml example1.html Thu Jul 31 13:09:30 2014 +0200 @@ -440,7 +440,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -1868,7 +1868,7 @@ 100% 0.0007913 100% - 3J5K_A + 3J5K_A
100% 0.0007913 100% - 3J5I_A + 3J5I_A
100% 0.0007913 100% - 3J5G_A + 3J5G_A
100% 0.0007913 100% - 3J5E_A + 3J5E_A
100% 0.0007913 100% - 3J5C_A + 3J5C_A
100% 0.0007913 100% - 3J5A_A + 3J5A_A
100% 0.0007913 100% - 3J58_A + 3J58_A
100% 0.0007913 100% - 3J56_A + 3J56_A
100% 0.0007913 100% - 3J54_A + 3J54_A
100% 0.0007913 100% - 3J52_A + 3J52_A
100% 0.0007913 100% - 3J51_A + 3J51_A
100% 0.0007913 100% - 3J50_A + 3J50_A
100% 0.0007913 100% - 3J4X_A + 3J4X_A
100% 0.0007913 100% - 3J37_A + 3J37_A
100% 0.0007913 100% - 3IZT_B + 3IZT_B
100% 0.0007913 100% - 3FIK_B + 3FIK_B
100% 0.0007913 100% - 3E1B_B + 3E1B_B
100% 0.0007913 100% - 2GYC_0 + 2GYC_0
100% 0.0007913 100% - 2GYA_0 + 2GYA_0
100% 0.0007913 100% - 2I2V_B + 2I2V_B
100% 0.0007913 100% - 2AW4_B + 2AW4_B
100% 0.0007913 100% - 2AWB_B + 2AWB_B
100% 0.0007913 100% - 1VS6_B + 1VS6_B
100% 0.0007913 100% - 1P85_0 + 1P85_0
81% 0.04882 100% - 1C2W_B + 1C2W_B
81% 11.9 92% - 3J44_1 + 3J44_1
81% 11.9 92% - 3J2L_1 + 3J2L_1
88% 11.9 100% - 3J62_AA + 3J62_AA
56% 11.9 100% - 4CE4_A + 4CE4_A
81% 11.9 100% - 4BYP_5 + 4BYP_5
81% 11.9 100% - 4BYW_5 + 4BYW_5
75% 11.9 100% - 4HUB_0 + 4HUB_0
100% 11.9 100% - 3J3F_5 + 3J3F_5
100% 11.9 100% - 3J3E_5 + 3J3E_5
81% 11.9 100% - 3ZEX_B + 3ZEX_B
56% 11.9 100% - 3OW2_0 + 3OW2_0
75% 11.9 100% - 4ADX_0 + 4ADX_0
88% 11.9 100% - 3U5F_6 + 3U5F_6
88% 11.9 100% - 3U5B_2 + 3U5B_2
75% 11.9 100% - 4A1D_1 + 4A1D_1
75% 11.9 100% - 4A18_1 + 4A18_1
75% 11.9 100% - 4A1B_1 + 4A1B_1
56% 11.9 100% - 3J0L_8 + 3J0L_8
56% 11.9 100% - 3J0O_8 + 3J0O_8
81% 11.9 100% - 3O58_1 + 3O58_1
81% 11.9 100% - 3O5H_1 + 3O5H_1
88% 11.9 100% - 3O2Z_1 + 3O2Z_1
88% 11.9 100% - 3O30_1 + 3O30_1
81% 11.9 100% - 3IZF_A + 3IZF_A
88% 11.9 100% - 3IZE_A + 3IZE_A
56% 11.9 100% - 3KO2_I + 3KO2_I
56% 11.9 100% - 3KO2_H + 3KO2_H
56% 11.9 100% - 3KO2_D + 3KO2_D
56% 11.9 100% - 3KO2_C + 3KO2_C
75% 11.9 100% - 3I56_0 + 3I56_0
81% 11.9 100% - 3JYX_5 + 3JYX_5
88% 11.9 100% - 3JYV_A + 3JYV_A
56% 11.9 100% - 1S1I_3 + 1S1I_3
56% 11.9 100% - 2QEX_0 + 2QEX_0
56% 11.9 100% - 3CPW_0 + 3CPW_0
75% 11.9 100% - 3CCV_0 + 3CCV_0
75% 11.9 100% - 3CCU_0 + 3CCU_0
75% 11.9 100% - 3CCS_0 + 3CCS_0
75% 11.9 100% - 3CCR_0 + 3CCR_0
75% 11.9 100% - 3CCQ_0 + 3CCQ_0
75% 11.9 100% - 3CCM_0 + 3CCM_0
75% 11.9 100% - 3CCL_0 + 3CCL_0
75% 11.9 100% - 3CCJ_0 + 3CCJ_0
75% 11.9 100% - 3CCE_0 + 3CCE_0
75% 11.9 100% - 3CC7_0 + 3CC7_0
75% 11.9 100% - 3CC2_0 + 3CC2_0
81% 11.9 100% - 2ZKR_0 + 2ZKR_0
56% 11.9 100% - 2QA4_0 + 2QA4_0
56% 11.9 100% - 2FTC_R + 2FTC_R
56% 11.9 100% - 1S72_0 + 1S72_0
75% 11.9 100% - 1YIT_0 + 1YIT_0
75% 11.9 100% - 1YHQ_0 + 1YHQ_0
75% 11.9 100% - 1YJW_0 + 1YJW_0
56% 11.9 100% - 1Q86_A + 1Q86_A
56% 11.9 100% - 1JJ2_0 + 1JJ2_0
56% 11.9 100% - 1KC8_A + 1KC8_A
56% 11.9 100% - 1FFK_0 + 1FFK_0
56% 11.9 100% - 1FG0_A + 1FG0_A
56% 11.9 100% - 1FFZ_A + 1FFZ_A
50% 47.03 100% - 4LGT_F + 4LGT_F
50% 47.03 100% - 4LGT_E + 4LGT_E
69% 47.03 100% - 4BTD_A + 4BTD_A
69% 47.03 100% - 4L6J_A + 4L6J_A
69% 47.03 100% - 4KFI_A + 4KFI_A
69% 47.03 100% - 4K0Q_A + 4K0Q_A
69% 47.03 100% - 4K0M_A + 4K0M_A
88% 47.03 100% - 3J3V_A + 3J3V_A
88% 47.03 100% - 3J3W_A + 3J3W_A
69% 47.03 100% - 3V6X_A + 3V6X_A
69% 47.03 100% - 3V6W_A + 3V6W_A
50% 47.03 100% - 2YMI_DD + 2YMI_DD
56% 47.03 100% - 2YMF_A + 2YMF_A
69% 47.03 100% - 2J01_A + 2J01_A
50% 47.03 100% - 4AQX_C + 4AQX_C
50% 47.03 100% - 4AQU_C + 4AQU_C @@ -3172,13 +3172,13 @@

Chain A, E. Coli 70s-fmetval-trnaval Post-translocation Complex (post4, 50s Subunit)

- Sequence ID: gi|557804730|pdb|3J5K|A + Sequence ID: gi|557804730|pdb|3J5K|A Length: 2903 Number of Matches: 4

@@ -3195,10 +3195,10 @@ ScoreExpectIdentitiesGapsStrand - 32.2 bits(16) - 0.0 - 16/16(100%) - 0/16(0%) + 32.2105 bits (16) + 0.000791334 + 16/16 (100%) + 0/16 (0%) Plus/Plus @@ -3217,10 +3217,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -3239,10 +3239,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -3261,10 +3261,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -3280,13 +3280,13 @@

Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Post- Translocation State (post3b, 50s Subunit)

- Sequence ID: gi|557804675|pdb|3J5I|A + Sequence ID: gi|557804675|pdb|3J5I|A Length: 2903 Number of Matches: 4

@@ -3303,10 +3303,10 @@ ScoreExpectIdentitiesGapsStrand - 32.2 bits(16) - 0.0 - 16/16(100%) - 0/16(0%) + 32.2105 bits (16) + 0.000791334 + 16/16 (100%) + 0/16 (0%) Plus/Plus @@ -3325,10 +3325,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -3347,10 +3347,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -3369,10 +3369,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -3388,13 +3388,13 @@

Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Post- Translocation State (post3a, 50s Subunit)

- Sequence ID: gi|557804619|pdb|3J5G|A + Sequence ID: gi|557804619|pdb|3J5G|A Length: 2903 Number of Matches: 4

@@ -3411,10 +3411,10 @@ ScoreExpectIdentitiesGapsStrand - 32.2 bits(16) - 0.0 - 16/16(100%) - 0/16(0%) + 32.2105 bits (16) + 0.000791334 + 16/16 (100%) + 0/16 (0%) Plus/Plus @@ -3433,10 +3433,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -3455,10 +3455,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -3477,10 +3477,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -3496,13 +3496,13 @@

Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Post- Translocation State (post2b, 50s Subunit)

- Sequence ID: gi|557804563|pdb|3J5E|A + Sequence ID: gi|557804563|pdb|3J5E|A Length: 2903 Number of Matches: 4

@@ -3519,10 +3519,10 @@ ScoreExpectIdentitiesGapsStrand - 32.2 bits(16) - 0.0 - 16/16(100%) - 0/16(0%) + 32.2105 bits (16) + 0.000791334 + 16/16 (100%) + 0/16 (0%) Plus/Plus @@ -3541,10 +3541,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -3563,10 +3563,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -3585,10 +3585,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -3604,13 +3604,13 @@

Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Post- Translocation State (post2a, 50s Subunit)

- Sequence ID: gi|557804507|pdb|3J5C|A + Sequence ID: gi|557804507|pdb|3J5C|A Length: 2903 Number of Matches: 4

@@ -3627,10 +3627,10 @@ ScoreExpectIdentitiesGapsStrand - 32.2 bits(16) - 0.0 - 16/16(100%) - 0/16(0%) + 32.2105 bits (16) + 0.000791334 + 16/16 (100%) + 0/16 (0%) Plus/Plus @@ -3649,10 +3649,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -3671,10 +3671,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -3693,10 +3693,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -3712,13 +3712,13 @@

Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Post- Translocation State (post1, 50s Subunit)

- Sequence ID: gi|557804451|pdb|3J5A|A + Sequence ID: gi|557804451|pdb|3J5A|A Length: 2903 Number of Matches: 4

@@ -3735,10 +3735,10 @@ ScoreExpectIdentitiesGapsStrand - 32.2 bits(16) - 0.0 - 16/16(100%) - 0/16(0%) + 32.2105 bits (16) + 0.000791334 + 16/16 (100%) + 0/16 (0%) Plus/Plus @@ -3757,10 +3757,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -3779,10 +3779,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -3801,10 +3801,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -3820,13 +3820,13 @@

Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5b, 50s Subunit)

- Sequence ID: gi|557804395|pdb|3J58|A + Sequence ID: gi|557804395|pdb|3J58|A Length: 2903 Number of Matches: 4

@@ -3843,10 +3843,10 @@ ScoreExpectIdentitiesGapsStrand - 32.2 bits(16) - 0.0 - 16/16(100%) - 0/16(0%) + 32.2105 bits (16) + 0.000791334 + 16/16 (100%) + 0/16 (0%) Plus/Plus @@ -3865,10 +3865,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -3887,10 +3887,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -3909,10 +3909,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -3928,13 +3928,13 @@

Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5a, 50s Subunit)

- Sequence ID: gi|557804339|pdb|3J56|A + Sequence ID: gi|557804339|pdb|3J56|A Length: 2903 Number of Matches: 4

@@ -3951,10 +3951,10 @@ ScoreExpectIdentitiesGapsStrand - 32.2 bits(16) - 0.0 - 16/16(100%) - 0/16(0%) + 32.2105 bits (16) + 0.000791334 + 16/16 (100%) + 0/16 (0%) Plus/Plus @@ -3973,10 +3973,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -3995,10 +3995,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -4017,10 +4017,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -4036,13 +4036,13 @@

Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre4, 50s Subunit)

- Sequence ID: gi|557804283|pdb|3J54|A + Sequence ID: gi|557804283|pdb|3J54|A Length: 2903 Number of Matches: 4

@@ -4059,10 +4059,10 @@ ScoreExpectIdentitiesGapsStrand - 32.2 bits(16) - 0.0 - 16/16(100%) - 0/16(0%) + 32.2105 bits (16) + 0.000791334 + 16/16 (100%) + 0/16 (0%) Plus/Plus @@ -4081,10 +4081,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -4103,10 +4103,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -4125,10 +4125,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -4144,13 +4144,13 @@

Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1a, 50s Subunit)

- Sequence ID: gi|557804227|pdb|3J52|A + Sequence ID: gi|557804227|pdb|3J52|A Length: 2903 Number of Matches: 4

@@ -4167,10 +4167,10 @@ ScoreExpectIdentitiesGapsStrand - 32.2 bits(16) - 0.0 - 16/16(100%) - 0/16(0%) + 32.2105 bits (16) + 0.000791334 + 16/16 (100%) + 0/16 (0%) Plus/Plus @@ -4189,10 +4189,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -4211,10 +4211,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -4233,10 +4233,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -4252,13 +4252,13 @@

Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre3, 50s Subunit)

- Sequence ID: gi|557804195|pdb|3J51|A + Sequence ID: gi|557804195|pdb|3J51|A Length: 2903 Number of Matches: 4

@@ -4275,10 +4275,10 @@ ScoreExpectIdentitiesGapsStrand - 32.2 bits(16) - 0.0 - 16/16(100%) - 0/16(0%) + 32.2105 bits (16) + 0.000791334 + 16/16 (100%) + 0/16 (0%) Plus/Plus @@ -4297,10 +4297,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -4319,10 +4319,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -4341,10 +4341,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -4360,13 +4360,13 @@

Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre2, 50s Subunit)

- Sequence ID: gi|557804163|pdb|3J50|A + Sequence ID: gi|557804163|pdb|3J50|A Length: 2903 Number of Matches: 4

@@ -4383,10 +4383,10 @@ ScoreExpectIdentitiesGapsStrand - 32.2 bits(16) - 0.0 - 16/16(100%) - 0/16(0%) + 32.2105 bits (16) + 0.000791334 + 16/16 (100%) + 0/16 (0%) Plus/Plus @@ -4405,10 +4405,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -4427,10 +4427,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -4449,10 +4449,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -4468,13 +4468,13 @@

Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1b, 50s Subunit)

- Sequence ID: gi|557804083|pdb|3J4X|A + Sequence ID: gi|557804083|pdb|3J4X|A Length: 2903 Number of Matches: 4

@@ -4491,10 +4491,10 @@ ScoreExpectIdentitiesGapsStrand - 32.2 bits(16) - 0.0 - 16/16(100%) - 0/16(0%) + 32.2105 bits (16) + 0.000791334 + 16/16 (100%) + 0/16 (0%) Plus/Plus @@ -4513,10 +4513,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -4535,10 +4535,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -4557,10 +4557,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -4576,13 +4576,13 @@

Chain A, Tetracycline Resistance Protein Tet(o) Bound To The Ribosome

- Sequence ID: gi|474452808|pdb|3J37|A + Sequence ID: gi|474452808|pdb|3J37|A Length: 2904 Number of Matches: 3

@@ -4599,10 +4599,10 @@ ScoreExpectIdentitiesGapsStrand - 32.2 bits(16) - 0.0 - 16/16(100%) - 0/16(0%) + 32.2105 bits (16) + 0.000791334 + 16/16 (100%) + 0/16 (0%) Plus/Plus @@ -4621,10 +4621,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -4643,10 +4643,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -4662,13 +4662,13 @@

Chain B, Structural Insights Into Cognate Vs. Near-Cognate Discrimination During Decoding. This Entry Contains The Large Subunit Of A Ribosome Programmed With A Near-Cognate Codon.

- Sequence ID: gi|326634210|pdb|3IZT|B + Sequence ID: gi|326634210|pdb|3IZT|B Length: 2904 Number of Matches: 3

@@ -4682,43 +4682,43 @@

Chain B, Structural Insights Into Cognate Vs. Near-Cognate Discrimination During Decoding. This Entry Contains The Large Subunit Of A Ribosome Programmed With A Cognate Codon

- Sequence ID: gi|326634243|pdb|3IZU|B + Sequence ID: gi|326634243|pdb|3IZU|B

Chain B, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class2 Of The Six Classes)

- Sequence ID: gi|380763703|pdb|3J0T|B + Sequence ID: gi|380763703|pdb|3J0T|B

Chain B, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class 4a Of The Six Classes)

- Sequence ID: gi|380763785|pdb|3J0W|B + Sequence ID: gi|380763785|pdb|3J0W|B

Chain B, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class 4b Of The Six Classes)

- Sequence ID: gi|380763843|pdb|3J0Y|B + Sequence ID: gi|380763843|pdb|3J0Y|B

Chain B, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class 3 Of The Six Classes)

- Sequence ID: gi|380763925|pdb|3J11|B + Sequence ID: gi|380763925|pdb|3J11|B

Chain B, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class 5 Of The Six Classes)

- Sequence ID: gi|380763959|pdb|3J12|B + Sequence ID: gi|380763959|pdb|3J12|B

Chain B, Structural Characterization Of Mrna-Trna Translocation Intermediates (50s Ribosome Of Class 6 Of The Six Classes)

- Sequence ID: gi|380764016|pdb|3J14|B + Sequence ID: gi|380764016|pdb|3J14|B

@@ -4733,10 +4733,10 @@ ScoreExpectIdentitiesGapsStrand - 32.2 bits(16) - 0.0 - 16/16(100%) - 0/16(0%) + 32.2105 bits (16) + 0.000791334 + 16/16 (100%) + 0/16 (0%) Plus/Plus @@ -4755,10 +4755,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -4777,10 +4777,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -4796,13 +4796,13 @@

Chain B, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit.

- Sequence ID: gi|224510767|pdb|3FIK|B + Sequence ID: gi|224510767|pdb|3FIK|B Length: 2903 Number of Matches: 4

@@ -4816,115 +4816,115 @@

Chain A, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting

- Sequence ID: gi|257097373|pdb|3I1N|A + Sequence ID: gi|257097373|pdb|3I1N|A

Chain A, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting

- Sequence ID: gi|257097425|pdb|3I1P|A + Sequence ID: gi|257097425|pdb|3I1P|A

Chain A, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting

- Sequence ID: gi|257097479|pdb|3I1R|A + Sequence ID: gi|257097479|pdb|3I1R|A

Chain A, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting

- Sequence ID: gi|257097533|pdb|3I1T|A + Sequence ID: gi|257097533|pdb|3I1T|A

Chain A, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting

- Sequence ID: gi|257097588|pdb|3I20|A + Sequence ID: gi|257097588|pdb|3I20|A

Chain A, Crystal Structure Of The E. Coli 70s Ribosome In An Intermediate State Of Ratcheting

- Sequence ID: gi|257097643|pdb|3I22|A + Sequence ID: gi|257097643|pdb|3I22|A

Chain B, E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide. This File Contains The 50s, The P-Site Trna And The Tnac Leader Peptide (Part 2 Of 2).

- Sequence ID: gi|294662251|pdb|2WWQ|B + Sequence ID: gi|294662251|pdb|2WWQ|B

Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Chloramphenicol. This File Contains The 50s Subunit Of The First 70s Ribosome With Chloramphenicol Bound.

- Sequence ID: gi|309320065|pdb|3OFC|A + Sequence ID: gi|309320065|pdb|3OFC|A

Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Clindamycin. This File Contains The 50s Subunit Of The First 70s Ribosome Bound To Clindamycin.

- Sequence ID: gi|309320169|pdb|3OFZ|A + Sequence ID: gi|309320169|pdb|3OFZ|A

Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Clindamycin. This File Contains The 50s Subunit Of The Second 70s Ribosome.

- Sequence ID: gi|309320200|pdb|3OG0|A + Sequence ID: gi|309320200|pdb|3OG0|A

Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Telithromycin. This File Contains The 50s Subunit Of The Second 70s Ribosome.

- Sequence ID: gi|315113654|pdb|3OAS|A + Sequence ID: gi|315113654|pdb|3OAS|A

Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Telithromycin. This File Contains The 50s Subunit Of The First 70s Ribosome With Telithromycin Bound.

- Sequence ID: gi|315113685|pdb|3OAT|A + Sequence ID: gi|315113685|pdb|3OAT|A

Chain A, Structures Of The Bacterial Ribosome In Classical And Hybrid States Of Trna Binding

- Sequence ID: gi|334359437|pdb|3R8S|A + Sequence ID: gi|334359437|pdb|3R8S|A

Chain A, Structures Of The Bacterial Ribosome In Classical And Hybrid States Of Trna Binding

- Sequence ID: gi|334359468|pdb|3R8T|A + Sequence ID: gi|334359468|pdb|3R8T|A

Chain A, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome

- Sequence ID: gi|371927526|pdb|3SGF|A + Sequence ID: gi|371927526|pdb|3SGF|A

Chain A, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome (Without Viomycin)

- Sequence ID: gi|371927651|pdb|3UOS|A + Sequence ID: gi|371927651|pdb|3UOS|A

Chain A, Structure Of The Bacterial Ribosome Complexed By Tmrna-Smpb And Ef-G During Translocation And Mld-Loading (50s Subunit)

- Sequence ID: gi|386783121|pdb|3J19|A + Sequence ID: gi|386783121|pdb|3J19|A

Chain A, Structure Of The Ribosome With Elongation Factor G Trapped In The Pre- Translocation State (pre-translocation 70s*trna Structure, 50s Subunit)

- Sequence ID: gi|567754995|pdb|3J5U|A + Sequence ID: gi|567754995|pdb|3J5U|A

Chain A, Structure Of The Ribosome With Elongation Factor G Trapped In The Pre- Translocation State (pre-translocation 70s*trna*ef-g Structure, 50s Subunit)

- Sequence ID: gi|567755029|pdb|3J5W|A + Sequence ID: gi|567755029|pdb|3J5W|A

@@ -4939,10 +4939,10 @@ ScoreExpectIdentitiesGapsStrand - 32.2 bits(16) - 0.0 - 16/16(100%) - 0/16(0%) + 32.2105 bits (16) + 0.000791334 + 16/16 (100%) + 0/16 (0%) Plus/Plus @@ -4961,10 +4961,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -4983,10 +4983,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -5005,10 +5005,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -5024,13 +5024,13 @@

Chain B, Structure Of The 50s Subunit Of E. Coli Ribosome In Pre-Accommodation State

- Sequence ID: gi|256032374|pdb|3E1B|B + Sequence ID: gi|256032374|pdb|3E1B|B Length: 2903 Number of Matches: 4

@@ -5044,7 +5044,7 @@

Chain B, Structure Of The 50s Subunit Of E. Coli Ribosome In Post-Accommodation State

- Sequence ID: gi|256032431|pdb|3E1D|B + Sequence ID: gi|256032431|pdb|3E1D|B

@@ -5059,10 +5059,10 @@ ScoreExpectIdentitiesGapsStrand - 32.2 bits(16) - 0.0 - 16/16(100%) - 0/16(0%) + 32.2105 bits (16) + 0.000791334 + 16/16 (100%) + 0/16 (0%) Plus/Plus @@ -5081,10 +5081,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -5103,10 +5103,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -5125,10 +5125,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -5144,13 +5144,13 @@

Chain 0, Structure Of The 50s Subunit Of A Secm-Stalled E. Coli Ribosome Complex Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1143

- Sequence ID: gi|157883716|pdb|2GYC|0 + Sequence ID: gi|157883716|pdb|2GYC|0 Length: 2740 Number of Matches: 4

@@ -5167,10 +5167,10 @@ ScoreExpectIdentitiesGapsStrand - 32.2 bits(16) - 0.0 - 16/16(100%) - 0/16(0%) + 32.2105 bits (16) + 0.000791334 + 16/16 (100%) + 0/16 (0%) Plus/Plus @@ -5189,10 +5189,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -5211,10 +5211,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -5233,10 +5233,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -5252,13 +5252,13 @@

Chain 0, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056

- Sequence ID: gi|157883710|pdb|2GYA|0 + Sequence ID: gi|157883710|pdb|2GYA|0 Length: 2740 Number of Matches: 4

@@ -5275,10 +5275,10 @@ ScoreExpectIdentitiesGapsStrand - 32.2 bits(16) - 0.0 - 16/16(100%) - 0/16(0%) + 32.2105 bits (16) + 0.000791334 + 16/16 (100%) + 0/16 (0%) Plus/Plus @@ -5297,10 +5297,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -5319,10 +5319,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -5341,10 +5341,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -5360,13 +5360,13 @@

Chain B, Crystal Structure Of Ribosome With Messenger Rna And The Anticodon Stem-Loop Of P-Site Trna. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.

- Sequence ID: gi|122922257|pdb|2I2V|B + Sequence ID: gi|122922257|pdb|2I2V|B Length: 2904 Number of Matches: 4

@@ -5383,10 +5383,10 @@ ScoreExpectIdentitiesGapsStrand - 32.2 bits(16) - 0.0 - 16/16(100%) - 0/16(0%) + 32.2105 bits (16) + 0.000791334 + 16/16 (100%) + 0/16 (0%) Plus/Plus @@ -5405,10 +5405,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -5427,10 +5427,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -5449,10 +5449,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -5468,13 +5468,13 @@

Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.

- Sequence ID: gi|83754062|pdb|2AW4|B + Sequence ID: gi|83754062|pdb|2AW4|B Length: 2904 Number of Matches: 4

@@ -5488,229 +5488,229 @@

Chain B, Crystal Structure Of Ribosome With Messenger Rna And The Anticodon Stem-Loop Of P-Site Trna. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.

- Sequence ID: gi|122922241|pdb|2I2T|B + Sequence ID: gi|122922241|pdb|2I2T|B

Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin. This File Contains The 50s Subunit Of The First 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes.

- Sequence ID: gi|157836046|pdb|2QOV|B + Sequence ID: gi|157836046|pdb|2QOV|B

Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes.

- Sequence ID: gi|157836098|pdb|2QOX|B + Sequence ID: gi|157836098|pdb|2QOX|B

Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin And Neomycin. This File Contains The 50s Subunit Of The First 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes.

- Sequence ID: gi|157836150|pdb|2QOZ|B + Sequence ID: gi|157836150|pdb|2QOZ|B

Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin And Neomycin. This File Contains The 50s Subunit Of The Second 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes.

- Sequence ID: gi|157836202|pdb|2QP1|B + Sequence ID: gi|157836202|pdb|2QP1|B

Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Neomycin. This File Contains The 50s Subunit Of The First 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.

- Sequence ID: gi|158429721|pdb|2QAM|B + Sequence ID: gi|158429721|pdb|2QAM|B

Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Neomycin. This File Contains The 50s Subunit Of The Second 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.

- Sequence ID: gi|158429773|pdb|2QAO|B + Sequence ID: gi|158429773|pdb|2QAO|B

Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin. This File Contains The 50s Subunit Of The First 70s Ribosome, With Gentamicin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.

- Sequence ID: gi|158429831|pdb|2QBA|B + Sequence ID: gi|158429831|pdb|2QBA|B

Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin. This File Contains The 50s Subunit Of The Second 70s Ribosome, With Gentamicin Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.

- Sequence ID: gi|158429883|pdb|2QBC|B + Sequence ID: gi|158429883|pdb|2QBC|B

Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.

- Sequence ID: gi|158429935|pdb|2QBE|B + Sequence ID: gi|158429935|pdb|2QBE|B

Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.

- Sequence ID: gi|158429988|pdb|2QBG|B + Sequence ID: gi|158429988|pdb|2QBG|B

Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Gentamicin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.

- Sequence ID: gi|158430041|pdb|2QBI|B + Sequence ID: gi|158430041|pdb|2QBI|B

Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Gentamicin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.

- Sequence ID: gi|158430094|pdb|2QBK|B + Sequence ID: gi|158430094|pdb|2QBK|B

Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Paromomycin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Paromomycin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.

- Sequence ID: gi|158431394|pdb|2Z4L|B + Sequence ID: gi|158431394|pdb|2Z4L|B

Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Paromomycin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Paromomycin And Rrf Bound. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.

- Sequence ID: gi|158431447|pdb|2Z4N|B + Sequence ID: gi|158431447|pdb|2Z4N|B

Chain B, Structure Of Pdf Binding Helix In Complex With The Ribosome (Part 1 Of 4)

- Sequence ID: gi|168988732|pdb|2VHM|B + Sequence ID: gi|168988732|pdb|2VHM|B

Chain B, Structure Of Pdf Binding Helix In Complex With The Ribosome. (Part 2 Of 4)

- Sequence ID: gi|168988763|pdb|2VHN|B + Sequence ID: gi|168988763|pdb|2VHN|B

Chain B, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound

- Sequence ID: gi|169404603|pdb|2RDO|B + Sequence ID: gi|169404603|pdb|2RDO|B

Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Hygromycin B. This File Contains The 50s Subunit Of The First 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes.

- Sequence ID: gi|197107301|pdb|3DF2|B + Sequence ID: gi|197107301|pdb|3DF2|B

Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Hygromycin B. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes.

- Sequence ID: gi|197107353|pdb|3DF4|B + Sequence ID: gi|197107353|pdb|3DF4|B

Chain 8, Ribosome-Secy Complex. This Entry 3kcr Contains 50s Ribosomal Subnit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3kc4

- Sequence ID: gi|290560329|pdb|3KCR|8 + Sequence ID: gi|290560329|pdb|3KCR|8

Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Cem-101. This File Contains The 50s Subunit Of The First 70s Ribosome Bound To Cem-101.

- Sequence ID: gi|308198729|pdb|3ORB|A + Sequence ID: gi|308198729|pdb|3ORB|A

Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 50s Subunit Of The Second 70s Ribosome.

- Sequence ID: gi|308388007|pdb|3OFQ|A + Sequence ID: gi|308388007|pdb|3OFQ|A

Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 50s Subunit Of The First 70s Ribosome With Erthromycin Bound.

- Sequence ID: gi|308388038|pdb|3OFR|A + Sequence ID: gi|308388038|pdb|3OFR|A

Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Chloramphenicol. This File Contains The 50s Subunit Of The Second 70s Ribosome.

- Sequence ID: gi|309320096|pdb|3OFD|A + Sequence ID: gi|309320096|pdb|3OFD|A

Chain 8, Structure Of The Ribosome-Secye Complex In The Membrane Environment

- Sequence ID: gi|329666014|pdb|3J01|8 + Sequence ID: gi|329666014|pdb|3J01|8

Chain A, Allosteric Control Of The Ribosome By Small-Molecule Antibiotics

- Sequence ID: gi|402550607|pdb|4GAR|A + Sequence ID: gi|402550607|pdb|4GAR|A

Chain A, Allosteric Control Of The Ribosome By Small-Molecule Antibiotics

- Sequence ID: gi|402550662|pdb|4GAU|A + Sequence ID: gi|402550662|pdb|4GAU|A

Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G

- Sequence ID: gi|524934273|pdb|4KIX|A + Sequence ID: gi|524934273|pdb|4KIX|A

Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G

- Sequence ID: gi|524934341|pdb|4KIZ|A + Sequence ID: gi|524934341|pdb|4KIZ|A

Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G

- Sequence ID: gi|524934404|pdb|4KJ1|A + Sequence ID: gi|524934404|pdb|4KJ1|A

Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G

- Sequence ID: gi|524934483|pdb|4KJ3|A + Sequence ID: gi|524934483|pdb|4KJ3|A

Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G

- Sequence ID: gi|524934551|pdb|4KJ5|A + Sequence ID: gi|524934551|pdb|4KJ5|A

Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G

- Sequence ID: gi|524934613|pdb|4KJ7|A + Sequence ID: gi|524934613|pdb|4KJ7|A

Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G

- Sequence ID: gi|524934678|pdb|4KJ9|A + Sequence ID: gi|524934678|pdb|4KJ9|A

Chain A, Control Of Ribosomal Subunit Rotation By Elongation Factor G

- Sequence ID: gi|524934740|pdb|4KJB|A + Sequence ID: gi|524934740|pdb|4KJB|A

Chain A, Visualization Of Two Trnas Trapped In Transit During Ef-g-mediated Translocation (50s Subunit)

- Sequence ID: gi|564730763|pdb|3J5O|A + Sequence ID: gi|564730763|pdb|3J5O|A

Chain A, Structure Of The E. Coli 50s Subunit With Ermbl Nascent Chain

- Sequence ID: gi|597959819|pdb|3J5L|A + Sequence ID: gi|597959819|pdb|3J5L|A

@@ -5725,10 +5725,10 @@ ScoreExpectIdentitiesGapsStrand - 32.2 bits(16) - 0.0 - 16/16(100%) - 0/16(0%) + 32.2105 bits (16) + 0.000791334 + 16/16 (100%) + 0/16 (0%) Plus/Plus @@ -5747,10 +5747,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -5769,10 +5769,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -5791,10 +5791,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -5810,13 +5810,13 @@

Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.

- Sequence ID: gi|83754118|pdb|2AWB|B + Sequence ID: gi|83754118|pdb|2AWB|B Length: 2904 Number of Matches: 4

@@ -5830,13 +5830,13 @@

Chain B, Model Of E. Coli Srp Bound To 70s Rncs

- Sequence ID: gi|126031747|pdb|2J28|B + Sequence ID: gi|126031747|pdb|2J28|B

Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.

- Sequence ID: gi|157880574|pdb|1VS8|B + Sequence ID: gi|157880574|pdb|1VS8|B

@@ -5851,10 +5851,10 @@ ScoreExpectIdentitiesGapsStrand - 32.2 bits(16) - 0.0 - 16/16(100%) - 0/16(0%) + 32.2105 bits (16) + 0.000791334 + 16/16 (100%) + 0/16 (0%) Plus/Plus @@ -5873,10 +5873,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -5895,10 +5895,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -5917,10 +5917,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -5936,13 +5936,13 @@

Chain B, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400.

- Sequence ID: gi|157880571|pdb|1VS6|B + Sequence ID: gi|157880571|pdb|1VS6|B Length: 2904 Number of Matches: 4

@@ -5956,37 +5956,37 @@

Chain B, The Hsp15 Protein Fitted Into The Low Resolution Cryo-Em Map 50s.Nc-Trna.Hsp15 Complex

- Sequence ID: gi|209870354|pdb|3BBX|B + Sequence ID: gi|209870354|pdb|3BBX|B

Chain B, Coordinates Of 16s And 23s Rrnas Fitted Into The Cryo-Em Map Of Ef-G-Bound Translocation Complex

- Sequence ID: gi|222447037|pdb|3DG0|B + Sequence ID: gi|222447037|pdb|3DG0|B

Chain B, Coordinates Of 16s And 23s Rrnas Fitted Into The Cryo-Em Map Of A Pretranslocation Complex

- Sequence ID: gi|222447039|pdb|3DG2|B + Sequence ID: gi|222447039|pdb|3DG2|B

Chain B, Coordinates Of 16s And 23s Rrnas Fitted Into The Cryo-Em Map Of Rf1-Bound Termination Complex

- Sequence ID: gi|222447041|pdb|3DG4|B + Sequence ID: gi|222447041|pdb|3DG4|B

Chain B, Coordinates Of 16s And 23s Rrnas Fitted Into The Cryo-Em Map Of Rf3-Bound Termination Complex

- Sequence ID: gi|222447043|pdb|3DG5|B + Sequence ID: gi|222447043|pdb|3DG5|B

Chain A, Crystal Structure Of The E. Coli Ribosome Bound To Cem-101. This File Contains The 50s Subunit Of The Second 70s Ribosome.

- Sequence ID: gi|308198355|pdb|1VT2|A + Sequence ID: gi|308198355|pdb|1VT2|A

@@ -6001,10 +6001,10 @@ ScoreExpectIdentitiesGapsStrand - 32.2 bits(16) - 0.0 - 16/16(100%) - 0/16(0%) + 32.2105 bits (16) + 0.000791334 + 16/16 (100%) + 0/16 (0%) Plus/Plus @@ -6023,10 +6023,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -6045,10 +6045,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -6067,10 +6067,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -6086,13 +6086,13 @@

Chain 0, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome

- Sequence ID: gi|33357900|pdb|1P85|0 + Sequence ID: gi|33357900|pdb|1P85|0 Length: 2904 Number of Matches: 4

@@ -6106,7 +6106,7 @@

Chain 0, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Initiation-Like State Of E. Coli 70s Ribosome

- Sequence ID: gi|33357927|pdb|1P86|0 + Sequence ID: gi|33357927|pdb|1P86|0

@@ -6121,10 +6121,10 @@ ScoreExpectIdentitiesGapsStrand - 32.2 bits(16) - 0.0 - 16/16(100%) - 0/16(0%) + 32.2105 bits (16) + 0.000791334 + 16/16 (100%) + 0/16 (0%) Plus/Plus @@ -6143,10 +6143,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -6165,10 +6165,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -6187,10 +6187,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -6206,13 +6206,13 @@

Chain B, 23s Rrna Structure Fitted To A Cryo-Electron Microscopic Map At 7.5 Angstroms Resolution

- Sequence ID: gi|7767146|pdb|1C2W|B + Sequence ID: gi|7767146|pdb|1C2W|B Length: 2904 Number of Matches: 2

@@ -6229,10 +6229,10 @@ ScoreExpectIdentitiesGapsStrand - 26.3 bits(13) - 0.0 - 13/13(100%) - 0/13(0%) + 26.2635 bits (13) + 0.0488207 + 13/13 (100%) + 0/13 (0%) Plus/Plus @@ -6251,10 +6251,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -6270,13 +6270,13 @@

Chain 1, Structure Of The Methanococcus Jannaschii Ribosome-secyebeta Channel Complex (50s Ribosomal Subunit)

- Sequence ID: gi|551701574|pdb|3J44|1 + Sequence ID: gi|551701574|pdb|3J44|1 Length: 3049 Number of Matches: 2

@@ -6293,10 +6293,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 12/13(92%) - 0/13(0%) + 18.3341 bits (9) + 11.9013 + 12/13 (92%) + 0/13 (0%) Plus/Plus @@ -6315,10 +6315,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -6334,13 +6334,13 @@

Chain 1, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Rna)

- Sequence ID: gi|428697991|pdb|3J2L|1 + Sequence ID: gi|428697991|pdb|3J2L|1 Length: 3049 Number of Matches: 2

@@ -6357,10 +6357,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 12/13(92%) - 0/13(0%) + 18.3341 bits (9) + 11.9013 + 12/13 (92%) + 0/13 (0%) Plus/Plus @@ -6379,10 +6379,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -6398,13 +6398,13 @@

Chain a, Model Of The Large Subunit Rna Based On A 5.5 A Cryo-em Map Of Triticum Aestivum Translating 80s Ribosome

- Sequence ID: gi|582044940|pdb|3J62|AA + Sequence ID: gi|582044940|pdb|3J62|AA Length: 3391 Number of Matches: 5

@@ -6421,10 +6421,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -6443,10 +6443,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Minus @@ -6465,10 +6465,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -6487,10 +6487,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Minus @@ -6509,10 +6509,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -6528,13 +6528,13 @@

Chain A, 39s Large Subunit Of The Porcine Mitochondrial Ribosome

- Sequence ID: gi|567755268|pdb|4CE4|A + Sequence ID: gi|567755268|pdb|4CE4|A Length: 1570 Number of Matches: 1

@@ -6551,10 +6551,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -6570,13 +6570,13 @@

Chain 5, Cryo-em Reconstruction Of The 80s-eif5b-met-itrnamet Eukaryotic Translation Initiation Complex

- Sequence ID: gi|558704783|pdb|4BYP|5 + Sequence ID: gi|558704783|pdb|4BYP|5 Length: 3396 Number of Matches: 5

@@ -6593,10 +6593,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -6615,10 +6615,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Minus @@ -6637,10 +6637,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -6659,10 +6659,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -6681,10 +6681,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -6700,13 +6700,13 @@

Chain 5, Cryo-em Reconstruction Of The 80s-eif5b-met-itrnamet Eukaryotic Translation Initiation Complex

- Sequence ID: gi|558704825|pdb|4BYW|5 + Sequence ID: gi|558704825|pdb|4BYW|5 Length: 3396 Number of Matches: 5

@@ -6723,10 +6723,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -6745,10 +6745,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Minus @@ -6767,10 +6767,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -6789,10 +6789,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -6811,10 +6811,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -6830,13 +6830,13 @@

Chain 0, The Re-refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution: More Complete Structure Of The L7/l12 And L1 Stalk, L5 And Lx Proteins

- Sequence ID: gi|508123724|pdb|4HUB|0 + Sequence ID: gi|508123724|pdb|4HUB|0 Length: 2910 Number of Matches: 3

@@ -6853,10 +6853,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Minus @@ -6875,10 +6875,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -6897,10 +6897,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -6916,13 +6916,13 @@

Chain 5, Structure Of The H. Sapiens 60s Rrna

- Sequence ID: gi|485601478|pdb|3J3F|5 + Sequence ID: gi|485601478|pdb|3J3F|5 Length: 5070 Number of Matches: 8

@@ -6939,10 +6939,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -6961,10 +6961,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -6983,10 +6983,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -7005,10 +7005,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -7027,10 +7027,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -7049,10 +7049,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -7071,10 +7071,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -7093,10 +7093,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -7112,13 +7112,13 @@

Chain 5, Structure Of The D. Melanogaster 60s Rrna

- Sequence ID: gi|485601474|pdb|3J3E|5 + Sequence ID: gi|485601474|pdb|3J3E|5 Length: 3970 Number of Matches: 4

@@ -7135,10 +7135,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -7157,10 +7157,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -7179,10 +7179,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -7201,10 +7201,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -7220,13 +7220,13 @@

Chain B, High_resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome

- Sequence ID: gi|449802187|pdb|3ZEX|B + Sequence ID: gi|449802187|pdb|3ZEX|B Length: 1465 Number of Matches: 2

@@ -7243,10 +7243,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -7265,10 +7265,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -7284,13 +7284,13 @@

Chain 0, Crystal Structure Of Enhanced Macrolide Bound To 50s Ribosomal Subunit

- Sequence ID: gi|392311504|pdb|3OW2|0 + Sequence ID: gi|392311504|pdb|3OW2|0 Length: 2902 Number of Matches: 2

@@ -7307,10 +7307,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -7329,10 +7329,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -7348,13 +7348,13 @@

Chain 0, The Cryo-em Structure Of The Archaeal 50s Ribosomal Subunit In Complex With Initiation Factor 6

- Sequence ID: gi|374977932|pdb|4ADX|0 + Sequence ID: gi|374977932|pdb|4ADX|0 Length: 2923 Number of Matches: 3

@@ -7371,10 +7371,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Minus @@ -7393,10 +7393,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -7415,10 +7415,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -7434,13 +7434,13 @@

Chain 6, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Ribosomal Rna And Ions Of The 40s Subunit, Ribosome B

- Sequence ID: gi|364506133|pdb|3U5F|6 + Sequence ID: gi|364506133|pdb|3U5F|6 Length: 1800 Number of Matches: 3

@@ -7457,10 +7457,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -7479,10 +7479,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -7501,10 +7501,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Minus @@ -7520,13 +7520,13 @@

Chain 2, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Ribosomal Rna And Ions Of The 40s Subunit, Ribosome A

- Sequence ID: gi|364506095|pdb|3U5B|2 + Sequence ID: gi|364506095|pdb|3U5B|2 Length: 1800 Number of Matches: 3

@@ -7540,13 +7540,13 @@

Chain 2, Cryo-em Reconstruction Of The 80s-eif5b-met-itrnamet Eukaryotic Translation Initiation Complex

- Sequence ID: gi|558704782|pdb|4BYO|2 + Sequence ID: gi|558704782|pdb|4BYO|2

Chain 2, Cryo-em Reconstruction Of The 80s-eif5b-met-itrnamet Eukaryotic Translation Initiation Complex

- Sequence ID: gi|558704824|pdb|4BYV|2 + Sequence ID: gi|558704824|pdb|4BYV|2

@@ -7561,10 +7561,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -7583,10 +7583,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -7605,10 +7605,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Minus @@ -7624,13 +7624,13 @@

Chain 1, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 4.

- Sequence ID: gi|358440203|pdb|4A1D|1 + Sequence ID: gi|358440203|pdb|4A1D|1 Length: 3119 Number of Matches: 3

@@ -7647,10 +7647,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -7669,10 +7669,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -7691,10 +7691,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -7710,13 +7710,13 @@

Chain 1, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1

- Sequence ID: gi|358440111|pdb|4A18|1 + Sequence ID: gi|358440111|pdb|4A18|1 Length: 3354 Number of Matches: 3

@@ -7733,10 +7733,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -7755,10 +7755,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -7777,10 +7777,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -7796,13 +7796,13 @@

Chain 1, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 3.

- Sequence ID: gi|358440157|pdb|4A1B|1 + Sequence ID: gi|358440157|pdb|4A1B|1 Length: 3354 Number of Matches: 3

@@ -7816,7 +7816,7 @@

Chain 1, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 2.

- Sequence ID: gi|359807703|pdb|4A19|1 + Sequence ID: gi|359807703|pdb|4A19|1

@@ -7831,10 +7831,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -7853,10 +7853,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -7875,10 +7875,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -7894,13 +7894,13 @@

Chain 8, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1

- Sequence ID: gi|357380452|pdb|3J0L|8 + Sequence ID: gi|357380452|pdb|3J0L|8 Length: 20 Number of Matches: 1

@@ -7917,10 +7917,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -7936,13 +7936,13 @@

Chain 8, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9a Cryo-Em Map: Classic Pre State 2

- Sequence ID: gi|357380483|pdb|3J0O|8 + Sequence ID: gi|357380483|pdb|3J0O|8 Length: 20 Number of Matches: 1

@@ -7959,10 +7959,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -7978,13 +7978,13 @@

Chain 1, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The First 80s In The Asymmetric Unit.

- Sequence ID: gi|315113523|pdb|3O58|1 + Sequence ID: gi|315113523|pdb|3O58|1 Length: 3396 Number of Matches: 5

@@ -7998,13 +7998,13 @@

Chain 5, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex With Arx1 And Rei1

- Sequence ID: gi|418837761|pdb|4B6B|5 + Sequence ID: gi|418837761|pdb|4B6B|5

Chain 1, Arx1 Pre-60s Particle. This Entry Contains The Rrna.

- Sequence ID: gi|597959861|pdb|3J64|1 + Sequence ID: gi|597959861|pdb|3J64|1

@@ -8019,10 +8019,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -8041,10 +8041,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Minus @@ -8063,10 +8063,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -8085,10 +8085,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -8107,10 +8107,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -8126,13 +8126,13 @@

Chain 1, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The Second 80s In The Asymmetric Unit.

- Sequence ID: gi|315113568|pdb|3O5H|1 + Sequence ID: gi|315113568|pdb|3O5H|1 Length: 3396 Number of Matches: 5

@@ -8146,13 +8146,13 @@

Chain 1, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Ribosomal Rna And Ions Of The 60s Subunit, Ribosome A

- Sequence ID: gi|364506130|pdb|3U5D|1 + Sequence ID: gi|364506130|pdb|3U5D|1

Chain 5, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Ribosomal Rna And Ions Of The 60s Subunit, Ribosome B

- Sequence ID: gi|364506168|pdb|3U5H|5 + Sequence ID: gi|364506168|pdb|3U5H|5

@@ -8167,10 +8167,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -8189,10 +8189,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Minus @@ -8211,10 +8211,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -8233,10 +8233,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -8255,10 +8255,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -8274,13 +8274,13 @@

Chain 1, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit Of The First 80s In The Asymmetric Unit.

- Sequence ID: gi|315113447|pdb|3O2Z|1 + Sequence ID: gi|315113447|pdb|3O2Z|1 Length: 1800 Number of Matches: 3

@@ -8297,10 +8297,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -8319,10 +8319,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -8341,10 +8341,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Minus @@ -8360,13 +8360,13 @@

Chain 1, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit Of The Second 80s In The Asymmetric Unit.

- Sequence ID: gi|315113475|pdb|3O30|1 + Sequence ID: gi|315113475|pdb|3O30|1 Length: 1800 Number of Matches: 3

@@ -8383,10 +8383,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -8405,10 +8405,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -8427,10 +8427,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Minus @@ -8446,13 +8446,13 @@

Chain A, Model Of The Large Subunit Rna Based On A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome (With Es27l-In Conformation)

- Sequence ID: gi|313103747|pdb|3IZF|A + Sequence ID: gi|313103747|pdb|3IZF|A Length: 3396 Number of Matches: 5

@@ -8469,10 +8469,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -8491,10 +8491,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Minus @@ -8513,10 +8513,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -8535,10 +8535,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -8557,10 +8557,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -8576,13 +8576,13 @@

Chain A, Model Of The Small Subunit Rna Based On A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome

- Sequence ID: gi|313103744|pdb|3IZE|A + Sequence ID: gi|313103744|pdb|3IZE|A Length: 1800 Number of Matches: 3

@@ -8599,10 +8599,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -8621,10 +8621,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -8643,10 +8643,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Minus @@ -8662,13 +8662,13 @@

Chain I, I-Msoi Re-Designed For Altered Dna Cleavage Specificity (-7c)

- Sequence ID: gi|296278448|pdb|3KO2|I + Sequence ID: gi|296278448|pdb|3KO2|I Length: 24 Number of Matches: 1

@@ -8685,10 +8685,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Minus @@ -8704,13 +8704,13 @@

Chain H, I-Msoi Re-Designed For Altered Dna Cleavage Specificity (-7c)

- Sequence ID: gi|296278447|pdb|3KO2|H + Sequence ID: gi|296278447|pdb|3KO2|H Length: 24 Number of Matches: 1

@@ -8727,10 +8727,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -8746,13 +8746,13 @@

Chain D, I-Msoi Re-Designed For Altered Dna Cleavage Specificity (-7c)

- Sequence ID: gi|296278444|pdb|3KO2|D + Sequence ID: gi|296278444|pdb|3KO2|D Length: 24 Number of Matches: 1

@@ -8769,10 +8769,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Minus @@ -8788,13 +8788,13 @@

Chain C, I-Msoi Re-Designed For Altered Dna Cleavage Specificity (-7c)

- Sequence ID: gi|296278443|pdb|3KO2|C + Sequence ID: gi|296278443|pdb|3KO2|C Length: 24 Number of Matches: 1

@@ -8811,10 +8811,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -8830,13 +8830,13 @@

Chain 0, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The Large Ribosomal Subunit

- Sequence ID: gi|290790096|pdb|3I56|0 + Sequence ID: gi|290790096|pdb|3I56|0 Length: 2923 Number of Matches: 3

@@ -8853,10 +8853,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Minus @@ -8875,10 +8875,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -8897,10 +8897,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -8916,13 +8916,13 @@

Chain 5, Structure Of The 60s Rrna For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution

- Sequence ID: gi|281500859|pdb|3JYX|5 + Sequence ID: gi|281500859|pdb|3JYX|5 Length: 3170 Number of Matches: 5

@@ -8939,10 +8939,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -8961,10 +8961,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Minus @@ -8983,10 +8983,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -9005,10 +9005,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -9027,10 +9027,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -9046,13 +9046,13 @@

Chain A, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution

- Sequence ID: gi|281500807|pdb|3JYV|A + Sequence ID: gi|281500807|pdb|3JYV|A Length: 1761 Number of Matches: 3

@@ -9069,10 +9069,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -9091,10 +9091,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -9113,10 +9113,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Minus @@ -9132,13 +9132,13 @@

Chain 3, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h.

- Sequence ID: gi|259090425|pdb|1S1I|3 + Sequence ID: gi|259090425|pdb|1S1I|3 Length: 2999 Number of Matches: 2

@@ -9155,10 +9155,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -9177,10 +9177,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -9196,13 +9196,13 @@

Chain 0, Negamycin Binds To The Wall Of The Nascent Chain Exit Tunnel Of The 50s Ribosomal Subunit

- Sequence ID: gi|208435493|pdb|2QEX|0 + Sequence ID: gi|208435493|pdb|2QEX|0 Length: 2772 Number of Matches: 2

@@ -9219,10 +9219,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -9241,10 +9241,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -9260,13 +9260,13 @@

Chain 0, The Structure Of The Antibiotic Linezolid Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|194368703|pdb|3CPW|0 + Sequence ID: gi|194368703|pdb|3CPW|0 Length: 2922 Number of Matches: 2

@@ -9283,10 +9283,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -9305,10 +9305,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -9324,13 +9324,13 @@

Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2616a

- Sequence ID: gi|188596372|pdb|3CCV|0 + Sequence ID: gi|188596372|pdb|3CCV|0 Length: 2923 Number of Matches: 3

@@ -9344,7 +9344,7 @@

Chain 0, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With Cc-puromycin

- Sequence ID: gi|188596403|pdb|3CD6|0 + Sequence ID: gi|188596403|pdb|3CD6|0

@@ -9359,10 +9359,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Minus @@ -9381,10 +9381,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -9403,10 +9403,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -9422,13 +9422,13 @@

Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2482c

- Sequence ID: gi|188596341|pdb|3CCU|0 + Sequence ID: gi|188596341|pdb|3CCU|0 Length: 2923 Number of Matches: 3

@@ -9445,10 +9445,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Minus @@ -9467,10 +9467,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -9489,10 +9489,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -9508,13 +9508,13 @@

Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2482a

- Sequence ID: gi|188596310|pdb|3CCS|0 + Sequence ID: gi|188596310|pdb|3CCS|0 Length: 2923 Number of Matches: 3

@@ -9531,10 +9531,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Minus @@ -9553,10 +9553,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -9575,10 +9575,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -9594,13 +9594,13 @@

Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation A2488c. Density For Anisomycin Is Visible But Not Included In The Model.

- Sequence ID: gi|188596279|pdb|3CCR|0 + Sequence ID: gi|188596279|pdb|3CCR|0 Length: 2923 Number of Matches: 3

@@ -9617,10 +9617,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Minus @@ -9639,10 +9639,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -9661,10 +9661,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -9680,13 +9680,13 @@

Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation A2488u

- Sequence ID: gi|188596248|pdb|3CCQ|0 + Sequence ID: gi|188596248|pdb|3CCQ|0 Length: 2923 Number of Matches: 3

@@ -9703,10 +9703,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Minus @@ -9725,10 +9725,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -9747,10 +9747,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -9766,13 +9766,13 @@

Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation G2611u

- Sequence ID: gi|188596217|pdb|3CCM|0 + Sequence ID: gi|188596217|pdb|3CCM|0 Length: 2923 Number of Matches: 2

@@ -9789,10 +9789,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Minus @@ -9811,10 +9811,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -9830,13 +9830,13 @@

Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation U2535c. Density For Anisomycin Is Visible But Not Included In Model.

- Sequence ID: gi|188596186|pdb|3CCL|0 + Sequence ID: gi|188596186|pdb|3CCL|0 Length: 2923 Number of Matches: 3

@@ -9853,10 +9853,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Minus @@ -9875,10 +9875,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -9897,10 +9897,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -9916,13 +9916,13 @@

Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation C2534u

- Sequence ID: gi|188596155|pdb|3CCJ|0 + Sequence ID: gi|188596155|pdb|3CCJ|0 Length: 2923 Number of Matches: 3

@@ -9939,10 +9939,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Minus @@ -9961,10 +9961,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -9983,10 +9983,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -10002,13 +10002,13 @@

Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation U2535a

- Sequence ID: gi|188596124|pdb|3CCE|0 + Sequence ID: gi|188596124|pdb|3CCE|0 Length: 2923 Number of Matches: 3

@@ -10025,10 +10025,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Minus @@ -10047,10 +10047,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -10069,10 +10069,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -10088,13 +10088,13 @@

Chain 0, Structure Of Anisomycin Resistant 50s Ribosomal Subunit: 23s Rrna Mutation C2487u

- Sequence ID: gi|188596093|pdb|3CC7|0 + Sequence ID: gi|188596093|pdb|3CC7|0 Length: 2923 Number of Matches: 3

@@ -10111,10 +10111,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Minus @@ -10133,10 +10133,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -10155,10 +10155,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -10174,13 +10174,13 @@

Chain 0, The Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution With Rrna Sequence For The 23s Rrna And Genome-Derived Sequences For R-Proteins

- Sequence ID: gi|188596031|pdb|3CC2|0 + Sequence ID: gi|188596031|pdb|3CC2|0 Length: 2923 Number of Matches: 3

@@ -10194,43 +10194,43 @@

Chain 0, Co-Crystal Structure Of Anisomycin Bound To The 50s Ribosomal Subunit

- Sequence ID: gi|188596062|pdb|3CC4|0 + Sequence ID: gi|188596062|pdb|3CC4|0

Chain 0, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|206581937|pdb|3CMA|0 + Sequence ID: gi|206581937|pdb|3CMA|0

Chain 0, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|206581970|pdb|3CME|0 + Sequence ID: gi|206581970|pdb|3CME|0

Chain 0, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit

- Sequence ID: gi|228312141|pdb|3G4S|0 + Sequence ID: gi|228312141|pdb|3G4S|0

Chain 0, Co-Crystal Structure Of Homoharringtonine Bound To The Large Ribosomal Subunit

- Sequence ID: gi|228312197|pdb|3G6E|0 + Sequence ID: gi|228312197|pdb|3G6E|0

Chain 0, Co-crystal Structure Of Bruceantin Bound To The Large Ribosomal Subunit

- Sequence ID: gi|228312233|pdb|3G71|0 + Sequence ID: gi|228312233|pdb|3G71|0

Chain 0, Co-Crystal Structure Of Mycalamide A Bound To The Large Ribosomal Subunit

- Sequence ID: gi|290790035|pdb|3I55|0 + Sequence ID: gi|290790035|pdb|3I55|0

@@ -10245,10 +10245,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Minus @@ -10267,10 +10267,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -10289,10 +10289,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -10308,13 +10308,13 @@

Chain 0, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map

- Sequence ID: gi|187609272|pdb|2ZKR|0 + Sequence ID: gi|187609272|pdb|2ZKR|0 Length: 2903 Number of Matches: 4

@@ -10331,10 +10331,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -10353,10 +10353,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -10375,10 +10375,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -10397,10 +10397,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -10416,13 +10416,13 @@

Chain 0, A More Complete Structure Of The The L7L12 STALK OF THE Haloarcula Marismortui 50s Large Ribosomal Subunit

- Sequence ID: gi|171848835|pdb|2QA4|0 + Sequence ID: gi|171848835|pdb|2QA4|0 Length: 2922 Number of Matches: 2

@@ -10439,10 +10439,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -10461,10 +10461,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -10480,13 +10480,13 @@

Chain R, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome

- Sequence ID: gi|99032306|pdb|2FTC|R + Sequence ID: gi|99032306|pdb|2FTC|R Length: 1568 Number of Matches: 1

@@ -10503,10 +10503,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -10522,13 +10522,13 @@

Chain 0, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution

- Sequence ID: gi|50513468|pdb|1S72|0 + Sequence ID: gi|50513468|pdb|1S72|0 Length: 2922 Number of Matches: 2

@@ -10542,85 +10542,85 @@

Chain 0, The Structure Of The Transition State Analogue "daa" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|83753123|pdb|1VQ4|0 + Sequence ID: gi|83753123|pdb|1VQ4|0

Chain 0, The Structure Of The Transition State Analogue "raa" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|83753155|pdb|1VQ5|0 + Sequence ID: gi|83753155|pdb|1VQ5|0

Chain 0, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|83753187|pdb|1VQ6|0 + Sequence ID: gi|83753187|pdb|1VQ6|0

Chain 0, The Structure Of The Transition State Analogue "dca" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|83753219|pdb|1VQ7|0 + Sequence ID: gi|83753219|pdb|1VQ7|0

Chain 0, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic Sparsomycin Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|83753251|pdb|1VQ8|0 + Sequence ID: gi|83753251|pdb|1VQ8|0

Chain 0, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic Sparsomycin Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|83753282|pdb|1VQ9|0 + Sequence ID: gi|83753282|pdb|1VQ9|0

Chain 0, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of The Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|83753314|pdb|1VQK|0 + Sequence ID: gi|83753314|pdb|1VQK|0

Chain 0, The Structure Of The Transition State Analogue "dcsn" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|83753345|pdb|1VQL|0 + Sequence ID: gi|83753345|pdb|1VQL|0

Chain 0, The Structure Of The Transition State Analogue "dan" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|83753376|pdb|1VQM|0 + Sequence ID: gi|83753376|pdb|1VQM|0

Chain 0, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|83753407|pdb|1VQN|0 + Sequence ID: gi|83753407|pdb|1VQN|0

Chain 0, The Structure Of Ccpmn Bound To The Large Ribosomal Subunit Haloarcula Marismortui

- Sequence ID: gi|83753439|pdb|1VQO|0 + Sequence ID: gi|83753439|pdb|1VQO|0

Chain 0, The Structure Of The Transition State Analogue "rap" Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|83753470|pdb|1VQP|0 + Sequence ID: gi|83753470|pdb|1VQP|0

Chain 0, 13-Deoxytedanolide Bound To The Large Subunit Of Haloarcula Marismortui

- Sequence ID: gi|145580171|pdb|2OTJ|0 + Sequence ID: gi|145580171|pdb|2OTJ|0

Chain 0, Girodazole Bound To The Large Subunit Of Haloarcula Marismortui

- Sequence ID: gi|145580202|pdb|2OTL|0 + Sequence ID: gi|145580202|pdb|2OTL|0

@@ -10635,10 +10635,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -10657,10 +10657,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -10676,13 +10676,13 @@

Chain 0, Crystal Structure Of Virginiamycin M And S Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|66360881|pdb|1YIT|0 + Sequence ID: gi|66360881|pdb|1YIT|0 Length: 2922 Number of Matches: 3

@@ -10696,7 +10696,7 @@

Chain 0, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Containing A Three Residue Deletion In L22

- Sequence ID: gi|66360914|pdb|1YJ9|0 + Sequence ID: gi|66360914|pdb|1YJ9|0

@@ -10711,10 +10711,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Minus @@ -10733,10 +10733,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -10755,10 +10755,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -10774,13 +10774,13 @@

Chain 0, Crystal Structure Of Azithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|66360782|pdb|1YHQ|0 + Sequence ID: gi|66360782|pdb|1YHQ|0 Length: 2922 Number of Matches: 3

@@ -10794,19 +10794,19 @@

Chain 0, Crystal Structure Of Erythromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|66360815|pdb|1YI2|0 + Sequence ID: gi|66360815|pdb|1YI2|0

Chain 0, Crystal Structure Of Telithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|66360848|pdb|1YIJ|0 + Sequence ID: gi|66360848|pdb|1YIJ|0

Chain 0, Crystal Structure Of Clindamycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|66360947|pdb|1YJN|0 + Sequence ID: gi|66360947|pdb|1YJN|0

@@ -10821,10 +10821,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Minus @@ -10843,10 +10843,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -10865,10 +10865,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -10884,13 +10884,13 @@

Chain 0, Crystal Structure Of Quinupristin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|66360980|pdb|1YJW|0 + Sequence ID: gi|66360980|pdb|1YJW|0 Length: 2922 Number of Matches: 3

@@ -10907,10 +10907,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Minus @@ -10929,10 +10929,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -10951,10 +10951,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -10970,13 +10970,13 @@

Chain A, Crystal Structure Of Cca-Phe-Cap-Biotin Bound Simultaneously At Half Occupancy To Both The A-Site And P- Site Of The The 50s Ribosomal Subunit.

- Sequence ID: gi|37928006|pdb|1Q86|A + Sequence ID: gi|37928006|pdb|1Q86|A Length: 2922 Number of Matches: 2

@@ -10993,10 +10993,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -11015,10 +11015,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -11034,13 +11034,13 @@

Chain 0, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution

- Sequence ID: gi|15825941|pdb|1JJ2|0 + Sequence ID: gi|15825941|pdb|1JJ2|0 Length: 2922 Number of Matches: 2

@@ -11054,97 +11054,97 @@

Chain 0, The Haloarcula Marismortui 50s Complexed With A Pretranslocational Intermediate In Protein Synthesis

- Sequence ID: gi|20150986|pdb|1KQS|0 + Sequence ID: gi|20150986|pdb|1KQS|0

Chain A, Co-Crystal Structure Of Azithromycin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|22219324|pdb|1M1K|A + Sequence ID: gi|22219324|pdb|1M1K|A

Chain A, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And Sparsomycin Bound To The 50s Ribosomal Subunit

- Sequence ID: gi|24159019|pdb|1M90|A + Sequence ID: gi|24159019|pdb|1M90|A

Chain A, Co-Crystal Structure Of Anisomycin Bound To The 50s Ribosomal Subunit

- Sequence ID: gi|34811116|pdb|1K73|A + Sequence ID: gi|34811116|pdb|1K73|A

Chain A, Structure Of Large Ribosomal Subunit In Complex With Virginiamycin M

- Sequence ID: gi|34811185|pdb|1N8R|A + Sequence ID: gi|34811185|pdb|1N8R|A

Chain A, Structure Of Chloramphenicol Bound To The 50s Ribosomal Subunit

- Sequence ID: gi|34811215|pdb|1NJI|A + Sequence ID: gi|34811215|pdb|1NJI|A

Chain A, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl Transferase Center Of The 50s Ribosomal Subunit

- Sequence ID: gi|37927899|pdb|1Q7Y|A + Sequence ID: gi|37927899|pdb|1Q7Y|A

Chain A, Crystal Structure Of Minihelix With 3' Puromycin Bound To A- Site Of The 50s Ribosomal Subunit.

- Sequence ID: gi|37927934|pdb|1Q81|A + Sequence ID: gi|37927934|pdb|1Q81|A

Chain A, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of The 50s Ribosomal Subunit

- Sequence ID: gi|37927970|pdb|1Q82|A + Sequence ID: gi|37927970|pdb|1Q82|A

Chain 0, Structure Of A Deacylated Trna Minihelix Bound To The E Site Of The Large Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|39654670|pdb|1QVF|0 + Sequence ID: gi|39654670|pdb|1QVF|0

Chain 0, Structure Of Cca Oligonucleotide Bound To The Trna Binding Sites Of The Large Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|39654701|pdb|1QVG|0 + Sequence ID: gi|39654701|pdb|1QVG|0

Chain A, Co-Crystal Structure Of Carbomycin A Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|157878615|pdb|1K8A|A + Sequence ID: gi|157878615|pdb|1K8A|A

Chain A, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|157878625|pdb|1K9M|A + Sequence ID: gi|157878625|pdb|1K9M|A

Chain A, Co-crystal Structure Of Spiramycin Bound To The 50s Ribosomal Subunit Of Haloarcula Marismortui

- Sequence ID: gi|157878639|pdb|1KD1|A + Sequence ID: gi|157878639|pdb|1KD1|A

Chain 0, Trigger Factor Ribosome Binding Domain In Complex With 50s

- Sequence ID: gi|157880605|pdb|1W2B|0 + Sequence ID: gi|157880605|pdb|1W2B|0

Chain 0, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound To The 50s Ribosomal Subunit Of H. Marismortui

- Sequence ID: gi|228311909|pdb|3CXC|0 + Sequence ID: gi|228311909|pdb|3CXC|0

@@ -11159,10 +11159,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -11181,10 +11181,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -11200,13 +11200,13 @@

Chain A, Co-Crystal Structure Of Blasticidin S Bound To The 50s Ribosomal Subunit

- Sequence ID: gi|34811146|pdb|1KC8|A + Sequence ID: gi|34811146|pdb|1KC8|A Length: 2922 Number of Matches: 2

@@ -11223,10 +11223,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -11245,10 +11245,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -11264,13 +11264,13 @@

Chain 0, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution

- Sequence ID: gi|10120918|pdb|1FFK|0 + Sequence ID: gi|10120918|pdb|1FFK|0 Length: 2922 Number of Matches: 2

@@ -11287,10 +11287,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -11309,10 +11309,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -11328,13 +11328,13 @@

Chain A, Large Ribosomal Subunit Complexed With A 13 Bp Minihelix- Puromycin Compound

- Sequence ID: gi|10120728|pdb|1FG0|A + Sequence ID: gi|10120728|pdb|1FG0|A Length: 602 Number of Matches: 2

@@ -11351,10 +11351,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -11373,10 +11373,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -11392,13 +11392,13 @@

Chain A, Large Ribosomal Subunit Complexed With R(Cc)-Da-Puromycin

- Sequence ID: gi|10120727|pdb|1FFZ|A + Sequence ID: gi|10120727|pdb|1FFZ|A Length: 602 Number of Matches: 2

@@ -11415,10 +11415,10 @@ ScoreExpectIdentitiesGapsStrand - 18.3 bits(9) - 11.9 - 9/9(100%) - 0/9(0%) + 18.3341 bits (9) + 11.9013 + 9/9 (100%) + 0/9 (0%) Plus/Plus @@ -11437,10 +11437,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -11456,13 +11456,13 @@

Chain F, Crystal Structure Of The Catalytic Domain Of Rlub In Complex With A 21-nucleotide Rna Substrate

- Sequence ID: gi|558705015|pdb|4LGT|F + Sequence ID: gi|558705015|pdb|4LGT|F Length: 21 Number of Matches: 1

@@ -11479,10 +11479,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -11498,13 +11498,13 @@

Chain E, Crystal Structure Of The Catalytic Domain Of Rlub In Complex With A 21-nucleotide Rna Substrate

- Sequence ID: gi|558705013|pdb|4LGT|E + Sequence ID: gi|558705013|pdb|4LGT|E Length: 21 Number of Matches: 1

@@ -11521,10 +11521,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -11540,13 +11540,13 @@

Chain A, Thermus Thermophilus Ribosome

- Sequence ID: gi|529280935|pdb|4BTD|A + Sequence ID: gi|529280935|pdb|4BTD|A Length: 2915 Number of Matches: 2

@@ -11563,10 +11563,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -11585,10 +11585,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -11604,13 +11604,13 @@

Chain A, Crystal Structure Of Blasticidin S Bound To Thermus Thermophilus 70s Ribosome. This File Contains The 50s Subunit And Blasticidin S Molecule From The First 70s Ribosome.

- Sequence ID: gi|528082310|pdb|4L6J|A + Sequence ID: gi|528082310|pdb|4L6J|A Length: 2879 Number of Matches: 2

@@ -11624,7 +11624,7 @@

Chain A, Crystal Structure Of Blasticidin S Bound To Thermus Thermophilus 70s Ribosome. This File Contains The 50s Subunit And Blasticidin S Molecule From The Second 70s Ribosome

- Sequence ID: gi|528082364|pdb|4L6L|A + Sequence ID: gi|528082364|pdb|4L6L|A

@@ -11639,10 +11639,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -11661,10 +11661,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -11680,13 +11680,13 @@

Chain A, Crystal Structure Of The 70s Ribosome Bound With The Q253p Mutant Of Release Factor Rf2. 50s Of The A Subunit

- Sequence ID: gi|520729408|pdb|4KFI|A + Sequence ID: gi|520729408|pdb|4KFI|A Length: 2879 Number of Matches: 2

@@ -11700,7 +11700,7 @@

Chain A, Crystal Structure Of The 70s Ribosome Bound With The Q253p Mutant Of Release Factor Rf2. 50s Of The B Subunit

- Sequence ID: gi|520729463|pdb|4KFL|A + Sequence ID: gi|520729463|pdb|4KFL|A

@@ -11715,10 +11715,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -11737,10 +11737,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -11756,13 +11756,13 @@

Chain A, Crystal Structure Of Thermus Thermophilus 70s Containing Trnas And Mrna Stop Codon With Pseudouridine

- Sequence ID: gi|520728860|pdb|4K0Q|A + Sequence ID: gi|520728860|pdb|4K0Q|A Length: 2915 Number of Matches: 2

@@ -11779,10 +11779,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -11801,10 +11801,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -11820,13 +11820,13 @@

Chain A, Crystal Structure Of Thermus Thermophilus 70s Containing Trnas And Mrna Stop Codon With Pseudouridine

- Sequence ID: gi|520728802|pdb|4K0M|A + Sequence ID: gi|520728802|pdb|4K0M|A Length: 2915 Number of Matches: 2

@@ -11843,10 +11843,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -11865,10 +11865,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -11884,13 +11884,13 @@

Chain A, Atomic Model Of The Immature 50s Subunit From Bacillus Subtilis (state I-a)

- Sequence ID: gi|512125286|pdb|3J3V|A + Sequence ID: gi|512125286|pdb|3J3V|A Length: 2927 Number of Matches: 5

@@ -11907,10 +11907,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -11929,10 +11929,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -11951,10 +11951,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -11973,10 +11973,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -11995,10 +11995,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -12014,13 +12014,13 @@

Chain A, Atomic Model Of The Immature 50s Subunit From Bacillus Subtilis (state Ii-a)

- Sequence ID: gi|512125306|pdb|3J3W|A + Sequence ID: gi|512125306|pdb|3J3W|A Length: 2927 Number of Matches: 5

@@ -12037,10 +12037,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -12059,10 +12059,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -12081,10 +12081,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -12103,10 +12103,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -12125,10 +12125,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -12144,13 +12144,13 @@

Chain A, Crystal Structure Of The Bacterial Ribosome Ram Mutation G347u. This Entry Contains The 50s Ribosomal Subunit Of The Second 70s Molecule In The Asymmetric Unit

- Sequence ID: gi|482676744|pdb|3V6X|A + Sequence ID: gi|482676744|pdb|3V6X|A Length: 2916 Number of Matches: 2

@@ -12167,10 +12167,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -12189,10 +12189,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -12208,13 +12208,13 @@

Chain A, Crystal Structure Of The Bacterial Ribosome Ram Mutation G347u. This Entry Contains The 50s Ribosomal Subunit Of The First 70s Molecule In The Asymmetric Unit

- Sequence ID: gi|482676712|pdb|3V6W|A + Sequence ID: gi|482676712|pdb|3V6W|A Length: 2916 Number of Matches: 2

@@ -12231,10 +12231,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -12253,10 +12253,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -12272,13 +12272,13 @@

Chain d, The Cryo-Em Structure Of A 3d Dna-Origami Object

- Sequence ID: gi|428697829|pdb|2YMI|DD + Sequence ID: gi|428697829|pdb|2YMI|DD Length: 56 Number of Matches: 1

@@ -12295,10 +12295,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Minus @@ -12314,13 +12314,13 @@

Chain A, The Cryo-Em Structure Of A 3d Dna-Origami Object

- Sequence ID: gi|428697789|pdb|2YMF|A + Sequence ID: gi|428697789|pdb|2YMF|A Length: 4896 Number of Matches: 2

@@ -12337,10 +12337,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -12359,10 +12359,10 @@ ScoreExpectIdentitiesGapsStrand - 14.4 bits(7) - 185.8 - 7/7(100%) - 0/7(0%) + 14.3694 bits (7) + 185.82 + 7/7 (100%) + 0/7 (0%) Plus/Plus @@ -12378,13 +12378,13 @@

Chain A, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I.

- Sequence ID: gi|396639330|pdb|2J01|A + Sequence ID: gi|396639330|pdb|2J01|A Length: 2787 Number of Matches: 2

@@ -12398,7 +12398,7 @@

Chain A, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4). This File Contains The 50s Subunit From Molecule Ii.

- Sequence ID: gi|396639355|pdb|2J03|A + Sequence ID: gi|396639355|pdb|2J03|A

@@ -12413,10 +12413,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -12435,10 +12435,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -12454,13 +12454,13 @@

Chain C, Crystal Structure Of I-Crei Complexed With Its Target Methylated At Position Plus 2 (In The B Strand) In The Presence Of Magnesium

- Sequence ID: gi|393715375|pdb|4AQX|C + Sequence ID: gi|393715375|pdb|4AQX|C Length: 14 Number of Matches: 1

@@ -12477,10 +12477,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus @@ -12496,13 +12496,13 @@

Chain C, Crystal Structure Of I-Crei Complexed With Its Target Methylated At Position Plus 2 (In The B Strand) In The Presence Of Calcium

- Sequence ID: gi|393715371|pdb|4AQU|C + Sequence ID: gi|393715371|pdb|4AQU|C Length: 24 Number of Matches: 1

@@ -12519,10 +12519,10 @@ ScoreExpectIdentitiesGapsStrand - 16.4 bits(8) - 47.0 - 8/8(100%) - 0/8(0%) + 16.3517 bits (8) + 47.0266 + 8/8 (100%) + 0/8 (0%) Plus/Plus diff -r 8ae714069687 -r 7f3f8c10f44b test-data/blast xml example3.html --- a/test-data/blast xml example3.html Thu Jul 31 14:55:07 2014 +0200 +++ b/test-data/blast xml example3.html Thu Jul 31 13:09:30 2014 +0200 @@ -719,7 +719,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -810,7 +810,7 @@ 100% 7.011e-08 100% - Subject_3 + Subject_3 @@ -827,13 +827,13 @@

DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000

- Sequence ID: Subject_3 + Sequence ID: Subject_3 Length: 323 Number of Matches: 1

@@ -850,10 +850,10 @@ ScoreExpectIdentitiesGapsStrand - 37.4 bits(40) - 0.0 - 20/20(100%) - 0/20(0%) + 37.3537 bits (40) + 7.01052e-08 + 20/20 (100%) + 0/20 (0%) Plus/Plus @@ -952,7 +952,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -1043,7 +1043,7 @@ 100% 7.011e-08 100% - Subject_6 + Subject_6 @@ -1060,13 +1060,13 @@

AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000

- Sequence ID: Subject_6 + Sequence ID: Subject_6 Length: 2457 Number of Matches: 1

@@ -1083,10 +1083,10 @@ ScoreExpectIdentitiesGapsStrand - 37.4 bits(40) - 0.0 - 20/20(100%) - 0/20(0%) + 37.3537 bits (40) + 7.01052e-08 + 20/20 (100%) + 0/20 (0%) Plus/Plus @@ -1410,7 +1410,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -1503,7 +1503,7 @@ 85% 2.981e-06 100% - Subject_2 + Subject_2 @@ -1520,13 +1520,13 @@

AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000

- Sequence ID: Subject_2 + Sequence ID: Subject_2 Length: 1045 Number of Matches: 1

@@ -1543,10 +1543,10 @@ ScoreExpectIdentitiesGapsStrand - 31.9 bits(34) - 0.0 - 17/17(100%) - 0/17(0%) + 31.9436 bits (34) + 2.98095e-06 + 17/17 (100%) + 0/17 (0%) Plus/Plus @@ -1595,7 +1595,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -1686,7 +1686,7 @@ 100% 7.011e-08 100% - Subject_3 + Subject_3 @@ -1703,13 +1703,13 @@

DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000

- Sequence ID: Subject_3 + Sequence ID: Subject_3 Length: 323 Number of Matches: 1

@@ -1726,10 +1726,10 @@ ScoreExpectIdentitiesGapsStrand - 37.4 bits(40) - 0.0 - 20/20(100%) - 0/20(0%) + 37.3537 bits (40) + 7.01052e-08 + 20/20 (100%) + 0/20 (0%) Plus/Plus @@ -1828,7 +1828,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -1919,7 +1919,7 @@ 100% 7.011e-08 100% - Subject_6 + Subject_6 @@ -1936,13 +1936,13 @@

AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000

- Sequence ID: Subject_6 + Sequence ID: Subject_6 Length: 2457 Number of Matches: 1

@@ -1959,10 +1959,10 @@ ScoreExpectIdentitiesGapsStrand - 37.4 bits(40) - 0.0 - 20/20(100%) - 0/20(0%) + 37.3537 bits (40) + 7.01052e-08 + 20/20 (100%) + 0/20 (0%) Plus/Plus @@ -2611,7 +2611,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -2699,7 +2699,7 @@ 100% 9.338e-08 92% - Subject_7 + Subject_7 @@ -2716,13 +2716,13 @@

AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000

- Sequence ID: Subject_7 + Sequence ID: Subject_7 Length: 4180 Number of Matches: 1

@@ -2739,10 +2739,10 @@ ScoreExpectIdentitiesGapsStrand - 37.4 bits(40) - 0.0 - 23/25(92%) - 0/25(0%) + 37.3537 bits (40) + 9.33825e-08 + 23/25 (92%) + 0/25 (0%) Plus/Plus @@ -2791,7 +2791,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -2879,7 +2879,7 @@ 100% 9.338e-08 92% - Subject_8 + Subject_8 @@ -2896,13 +2896,13 @@

EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000

- Sequence ID: Subject_8 + Sequence ID: Subject_8 Length: 4983 Number of Matches: 1

@@ -2919,10 +2919,10 @@ ScoreExpectIdentitiesGapsStrand - 37.4 bits(40) - 0.0 - 23/25(92%) - 0/25(0%) + 37.3537 bits (40) + 9.33825e-08 + 23/25 (92%) + 0/25 (0%) Plus/Plus @@ -3121,7 +3121,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -3213,7 +3213,7 @@ 100% 6.629e-23 86% - Subject_7 + Subject_7 @@ -3230,13 +3230,13 @@

AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000

- Sequence ID: Subject_7 + Sequence ID: Subject_7 Length: 4180 Number of Matches: 1

@@ -3253,10 +3253,10 @@ ScoreExpectIdentitiesGapsStrand - 89.7 bits(98) - 0.0 - 64/74(86%) - 0/74(0%) + 89.6514 bits (98) + 6.62923e-23 + 64/74 (86%) + 0/74 (0%) Plus/Plus @@ -3308,7 +3308,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -3400,7 +3400,7 @@ 100% 6.629e-23 86% - Subject_8 + Subject_8 @@ -3417,13 +3417,13 @@

EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000

- Sequence ID: Subject_8 + Sequence ID: Subject_8 Length: 4983 Number of Matches: 1

@@ -3440,10 +3440,10 @@ ScoreExpectIdentitiesGapsStrand - 89.7 bits(98) - 0.0 - 64/74(86%) - 0/74(0%) + 89.6514 bits (98) + 6.62923e-23 + 64/74 (86%) + 0/74 (0%) Plus/Plus diff -r 8ae714069687 -r 7f3f8c10f44b test-data/blast xml example3b.html --- a/test-data/blast xml example3b.html Thu Jul 31 14:55:07 2014 +0200 +++ b/test-data/blast xml example3b.html Thu Jul 31 13:09:30 2014 +0200 @@ -719,7 +719,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -810,7 +810,7 @@ 100% 7.011e-08 100% - Subject_3 + Subject_3 @@ -827,13 +827,13 @@

DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000

- Sequence ID: Subject_3 + Sequence ID: Subject_3 Length: 323 Number of Matches: 1

@@ -850,10 +850,10 @@ ScoreExpectIdentitiesGapsStrand - 37.4 bits(40) - 0.0 - 20/20(100%) - 0/20(0%) + 37.3537 bits (40) + 7.01052e-08 + 20/20 (100%) + 0/20 (0%) Plus/Plus @@ -952,7 +952,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -1043,7 +1043,7 @@ 100% 7.011e-08 100% - Subject_6 + Subject_6 @@ -1060,13 +1060,13 @@

AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000

- Sequence ID: Subject_6 + Sequence ID: Subject_6 Length: 2457 Number of Matches: 1

@@ -1083,10 +1083,10 @@ ScoreExpectIdentitiesGapsStrand - 37.4 bits(40) - 0.0 - 20/20(100%) - 0/20(0%) + 37.3537 bits (40) + 7.01052e-08 + 20/20 (100%) + 0/20 (0%) Plus/Plus @@ -1410,7 +1410,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -1503,7 +1503,7 @@ 85% 2.981e-06 100% - Subject_2 + Subject_2 @@ -1520,13 +1520,13 @@

AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000

- Sequence ID: Subject_2 + Sequence ID: Subject_2 Length: 1045 Number of Matches: 1

@@ -1543,10 +1543,10 @@ ScoreExpectIdentitiesGapsStrand - 31.9 bits(34) - 0.0 - 17/17(100%) - 0/17(0%) + 31.9436 bits (34) + 2.98095e-06 + 17/17 (100%) + 0/17 (0%) Plus/Plus @@ -1595,7 +1595,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -1686,7 +1686,7 @@ 100% 7.011e-08 100% - Subject_3 + Subject_3 @@ -1703,13 +1703,13 @@

DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000

- Sequence ID: Subject_3 + Sequence ID: Subject_3 Length: 323 Number of Matches: 1

@@ -1726,10 +1726,10 @@ ScoreExpectIdentitiesGapsStrand - 37.4 bits(40) - 0.0 - 20/20(100%) - 0/20(0%) + 37.3537 bits (40) + 7.01052e-08 + 20/20 (100%) + 0/20 (0%) Plus/Plus @@ -1828,7 +1828,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -1919,7 +1919,7 @@ 100% 7.011e-08 100% - Subject_6 + Subject_6 @@ -1936,13 +1936,13 @@

AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000

- Sequence ID: Subject_6 + Sequence ID: Subject_6 Length: 2457 Number of Matches: 1

@@ -1959,10 +1959,10 @@ ScoreExpectIdentitiesGapsStrand - 37.4 bits(40) - 0.0 - 20/20(100%) - 0/20(0%) + 37.3537 bits (40) + 7.01052e-08 + 20/20 (100%) + 0/20 (0%) Plus/Plus @@ -2611,7 +2611,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -2699,7 +2699,7 @@ 100% 9.338e-08 92% - Subject_7 + Subject_7 @@ -2716,13 +2716,13 @@

AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000

- Sequence ID: Subject_7 + Sequence ID: Subject_7 Length: 4180 Number of Matches: 1

@@ -2739,10 +2739,10 @@ ScoreExpectIdentitiesGapsStrand - 37.4 bits(40) - 0.0 - 23/25(92%) - 0/25(0%) + 37.3537 bits (40) + 9.33825e-08 + 23/25 (92%) + 0/25 (0%) Plus/Plus @@ -2791,7 +2791,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -2879,7 +2879,7 @@ 100% 9.338e-08 92% - Subject_8 + Subject_8 @@ -2896,13 +2896,13 @@

EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000

- Sequence ID: Subject_8 + Sequence ID: Subject_8 Length: 4983 Number of Matches: 1

@@ -2919,10 +2919,10 @@ ScoreExpectIdentitiesGapsStrand - 37.4 bits(40) - 0.0 - 23/25(92%) - 0/25(0%) + 37.3537 bits (40) + 9.33825e-08 + 23/25 (92%) + 0/25 (0%) Plus/Plus @@ -3121,7 +3121,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -3213,7 +3213,7 @@ 100% 6.629e-23 86% - Subject_7 + Subject_7 @@ -3230,13 +3230,13 @@

AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000

- Sequence ID: Subject_7 + Sequence ID: Subject_7 Length: 4180 Number of Matches: 1

@@ -3253,10 +3253,10 @@ ScoreExpectIdentitiesGapsStrand - 89.7 bits(98) - 0.0 - 64/74(86%) - 0/74(0%) + 89.6514 bits (98) + 6.62923e-23 + 64/74 (86%) + 0/74 (0%) Plus/Plus @@ -3308,7 +3308,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -3400,7 +3400,7 @@ 100% 6.629e-23 86% - Subject_8 + Subject_8 @@ -3417,13 +3417,13 @@

EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000

- Sequence ID: Subject_8 + Sequence ID: Subject_8 Length: 4983 Number of Matches: 1

@@ -3440,10 +3440,10 @@ ScoreExpectIdentitiesGapsStrand - 89.7 bits(98) - 0.0 - 64/74(86%) - 0/74(0%) + 89.6514 bits (98) + 6.62923e-23 + 64/74 (86%) + 0/74 (0%) Plus/Plus diff -r 8ae714069687 -r 7f3f8c10f44b test-data/blast xml example4.html --- a/test-data/blast xml example4.html Thu Jul 31 14:55:07 2014 +0200 +++ b/test-data/blast xml example4.html Thu Jul 31 13:09:30 2014 +0200 @@ -473,7 +473,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -575,7 +575,7 @@ 100% 1.513e-07 100% - 5 + 5
100% 1.513e-07 100% - 2 + 2 @@ -605,13 +605,13 @@

AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000

- Sequence ID: gnl|BL_ORD_ID|5 + Sequence ID: gnl|BL_ORD_ID|5 Length: 2457 Number of Matches: 1

@@ -628,10 +628,10 @@ ScoreExpectIdentitiesGapsStrand - 40.1 bits(20) - 0.0 - 20/20(100%) - 0/20(0%) + 40.14 bits (20) + 1.51296e-07 + 20/20 (100%) + 0/20 (0%) Plus/Plus @@ -647,13 +647,13 @@

DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000

- Sequence ID: gnl|BL_ORD_ID|2 + Sequence ID: gnl|BL_ORD_ID|2 Length: 323 Number of Matches: 1

@@ -670,10 +670,10 @@ ScoreExpectIdentitiesGapsStrand - 40.1 bits(20) - 0.0 - 20/20(100%) - 0/20(0%) + 40.14 bits (20) + 1.51296e-07 + 20/20 (100%) + 0/20 (0%) Plus/Plus @@ -747,7 +747,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -862,7 +862,7 @@ 100% 1.513e-07 100% - 5 + 5
100% 1.513e-07 100% - 2 + 2
85% 9.334e-06 100% - 1 + 1 @@ -905,13 +905,13 @@

AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000

- Sequence ID: gnl|BL_ORD_ID|5 + Sequence ID: gnl|BL_ORD_ID|5 Length: 2457 Number of Matches: 1

@@ -928,10 +928,10 @@ ScoreExpectIdentitiesGapsStrand - 40.1 bits(20) - 0.0 - 20/20(100%) - 0/20(0%) + 40.14 bits (20) + 1.51296e-07 + 20/20 (100%) + 0/20 (0%) Plus/Plus @@ -947,13 +947,13 @@

DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000

- Sequence ID: gnl|BL_ORD_ID|2 + Sequence ID: gnl|BL_ORD_ID|2 Length: 323 Number of Matches: 1

@@ -970,10 +970,10 @@ ScoreExpectIdentitiesGapsStrand - 40.1 bits(20) - 0.0 - 20/20(100%) - 0/20(0%) + 40.14 bits (20) + 1.51296e-07 + 20/20 (100%) + 0/20 (0%) Plus/Plus @@ -989,13 +989,13 @@

AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000

- Sequence ID: gnl|BL_ORD_ID|1 + Sequence ID: gnl|BL_ORD_ID|1 Length: 1045 Number of Matches: 1

@@ -1012,10 +1012,10 @@ ScoreExpectIdentitiesGapsStrand - 34.2 bits(17) - 0.0 - 17/17(100%) - 0/17(0%) + 34.1929 bits (17) + 9.33411e-06 + 17/17 (100%) + 0/17 (0%) Plus/Plus @@ -1114,7 +1114,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -1217,7 +1217,7 @@ 88% 3.148e-06 95% - 7 + 7
88% 3.148e-06 95% - 6 + 6 @@ -1247,13 +1247,13 @@

EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000

- Sequence ID: gnl|BL_ORD_ID|7 + Sequence ID: gnl|BL_ORD_ID|7 Length: 4983 Number of Matches: 1

@@ -1270,10 +1270,10 @@ ScoreExpectIdentitiesGapsStrand - 36.2 bits(18) - 0.0 - 21/22(95%) - 0/22(0%) + 36.1753 bits (18) + 3.14801e-06 + 21/22 (95%) + 0/22 (0%) Plus/Plus @@ -1289,13 +1289,13 @@

AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000

- Sequence ID: gnl|BL_ORD_ID|6 + Sequence ID: gnl|BL_ORD_ID|6 Length: 4180 Number of Matches: 1

@@ -1312,10 +1312,10 @@ ScoreExpectIdentitiesGapsStrand - 36.2 bits(18) - 0.0 - 21/22(95%) - 0/22(0%) + 36.1753 bits (18) + 3.14801e-06 + 21/22 (95%) + 0/22 (0%) Plus/Plus @@ -1364,7 +1364,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -1467,7 +1467,7 @@ 100% 3.564e-15 86% - 7 + 7
100% 3.564e-15 86% - 6 + 6 @@ -1497,13 +1497,13 @@

EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000

- Sequence ID: gnl|BL_ORD_ID|7 + Sequence ID: gnl|BL_ORD_ID|7 Length: 4983 Number of Matches: 1

@@ -1520,10 +1520,10 @@ ScoreExpectIdentitiesGapsStrand - 67.9 bits(34) - 0.0 - 64/74(86%) - 0/74(0%) + 67.8929 bits (34) + 3.56369e-15 + 64/74 (86%) + 0/74 (0%) Plus/Plus @@ -1542,13 +1542,13 @@

AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000

- Sequence ID: gnl|BL_ORD_ID|6 + Sequence ID: gnl|BL_ORD_ID|6 Length: 4180 Number of Matches: 1

@@ -1565,10 +1565,10 @@ ScoreExpectIdentitiesGapsStrand - 67.9 bits(34) - 0.0 - 64/74(86%) - 0/74(0%) + 67.8929 bits (34) + 3.56369e-15 + 64/74 (86%) + 0/74 (0%) Plus/Minus diff -r 8ae714069687 -r 7f3f8c10f44b test-data/blast xml example4b.html --- a/test-data/blast xml example4b.html Thu Jul 31 14:55:07 2014 +0200 +++ b/test-data/blast xml example4b.html Thu Jul 31 13:09:30 2014 +0200 @@ -473,7 +473,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -575,7 +575,7 @@ 100% 1.513e-07 100% - 5 + 5
100% 1.513e-07 100% - 2 + 2 @@ -605,13 +605,13 @@

AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000

- Sequence ID: gnl|BL_ORD_ID|5 + Sequence ID: gnl|BL_ORD_ID|5 Length: 2457 Number of Matches: 1

@@ -628,10 +628,10 @@ ScoreExpectIdentitiesGapsStrand - 40.1 bits(20) - 0.0 - 20/20(100%) - 0/20(0%) + 40.14 bits (20) + 1.51296e-07 + 20/20 (100%) + 0/20 (0%) Plus/Plus @@ -647,13 +647,13 @@

DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000

- Sequence ID: gnl|BL_ORD_ID|2 + Sequence ID: gnl|BL_ORD_ID|2 Length: 323 Number of Matches: 1

@@ -670,10 +670,10 @@ ScoreExpectIdentitiesGapsStrand - 40.1 bits(20) - 0.0 - 20/20(100%) - 0/20(0%) + 40.14 bits (20) + 1.51296e-07 + 20/20 (100%) + 0/20 (0%) Plus/Plus @@ -747,7 +747,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -862,7 +862,7 @@ 100% 1.513e-07 100% - 5 + 5
100% 1.513e-07 100% - 2 + 2
85% 9.334e-06 100% - 1 + 1 @@ -905,13 +905,13 @@

AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000

- Sequence ID: gnl|BL_ORD_ID|5 + Sequence ID: gnl|BL_ORD_ID|5 Length: 2457 Number of Matches: 1

@@ -928,10 +928,10 @@ ScoreExpectIdentitiesGapsStrand - 40.1 bits(20) - 0.0 - 20/20(100%) - 0/20(0%) + 40.14 bits (20) + 1.51296e-07 + 20/20 (100%) + 0/20 (0%) Plus/Plus @@ -947,13 +947,13 @@

DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000

- Sequence ID: gnl|BL_ORD_ID|2 + Sequence ID: gnl|BL_ORD_ID|2 Length: 323 Number of Matches: 1

@@ -970,10 +970,10 @@ ScoreExpectIdentitiesGapsStrand - 40.1 bits(20) - 0.0 - 20/20(100%) - 0/20(0%) + 40.14 bits (20) + 1.51296e-07 + 20/20 (100%) + 0/20 (0%) Plus/Plus @@ -989,13 +989,13 @@

AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000

- Sequence ID: gnl|BL_ORD_ID|1 + Sequence ID: gnl|BL_ORD_ID|1 Length: 1045 Number of Matches: 1

@@ -1012,10 +1012,10 @@ ScoreExpectIdentitiesGapsStrand - 34.2 bits(17) - 0.0 - 17/17(100%) - 0/17(0%) + 34.1929 bits (17) + 9.33411e-06 + 17/17 (100%) + 0/17 (0%) Plus/Plus @@ -1114,7 +1114,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -1217,7 +1217,7 @@ 88% 3.148e-06 95% - 7 + 7
88% 3.148e-06 95% - 6 + 6 @@ -1247,13 +1247,13 @@

EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000

- Sequence ID: gnl|BL_ORD_ID|7 + Sequence ID: gnl|BL_ORD_ID|7 Length: 4983 Number of Matches: 1

@@ -1270,10 +1270,10 @@ ScoreExpectIdentitiesGapsStrand - 36.2 bits(18) - 0.0 - 21/22(95%) - 0/22(0%) + 36.1753 bits (18) + 3.14801e-06 + 21/22 (95%) + 0/22 (0%) Plus/Plus @@ -1289,13 +1289,13 @@

AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000

- Sequence ID: gnl|BL_ORD_ID|6 + Sequence ID: gnl|BL_ORD_ID|6 Length: 4180 Number of Matches: 1

@@ -1312,10 +1312,10 @@ ScoreExpectIdentitiesGapsStrand - 36.2 bits(18) - 0.0 - 21/22(95%) - 0/22(0%) + 36.1753 bits (18) + 3.14801e-06 + 21/22 (95%) + 0/22 (0%) Plus/Plus @@ -1364,7 +1364,7 @@
40–50
50–80
80–200
-
200≤
+
≥200
@@ -1467,7 +1467,7 @@ 100% 3.564e-15 86% - 7 + 7
100% 3.564e-15 86% - 6 + 6 @@ -1497,13 +1497,13 @@

EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000

- Sequence ID: gnl|BL_ORD_ID|7 + Sequence ID: gnl|BL_ORD_ID|7 Length: 4983 Number of Matches: 1

@@ -1520,10 +1520,10 @@ ScoreExpectIdentitiesGapsStrand - 67.9 bits(34) - 0.0 - 64/74(86%) - 0/74(0%) + 67.8929 bits (34) + 3.56369e-15 + 64/74 (86%) + 0/74 (0%) Plus/Plus @@ -1542,13 +1542,13 @@

AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000

- Sequence ID: gnl|BL_ORD_ID|6 + Sequence ID: gnl|BL_ORD_ID|6 Length: 4180 Number of Matches: 1

@@ -1565,10 +1565,10 @@ ScoreExpectIdentitiesGapsStrand - 67.9 bits(34) - 0.0 - 64/74(86%) - 0/74(0%) + 67.8929 bits (34) + 3.56369e-15 + 64/74 (86%) + 0/74 (0%) Plus/Minus