Mercurial > repos > jankanis > blast2html

changeset 14:0b33898bba45

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
small bugfixes (one for python 3.4)
author Jan Kanis <jan.code@jankanis.nl>
date Mon, 12 May 2014 17:32:01 +0200
parents c2d63adb83db
children 648b3b7437da
files blast_html.py
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/blast_html.py	Mon May 12 17:13:49 2014 +0200
+++ b/blast_html.py	Mon May 12 17:32:01 2014 +0200
@@ -71,9 +71,9 @@
 @filter
 def alignment_pre(hsp):
     return (
-        "Query  {:>7s}  {}  {}\n".format(hsp['Hsp_query-from'], hsp.Hsp_qseq, hsp['Hsp_query-to']) +
+        "Query  {:>7s}  {}  {}\n".format(hsp['Hsp_query-from'].text, hsp.Hsp_qseq, hsp['Hsp_query-to'].text) +
         "       {:7s}  {}\n".format('', hsp.Hsp_midline) +
-        "Subject{:>7s}  {}  {}".format(hsp['Hsp_hit-from'], hsp.Hsp_hseq, hsp['Hsp_hit-to'])
+        "Subject{:>7s}  {}  {}".format(hsp['Hsp_hit-from'].text, hsp.Hsp_hseq, hsp['Hsp_hit-to'].text)
     )
 
 @filter('len')
@@ -105,7 +105,7 @@
 
     max_scale_labels = 10
 
-    templatename = 'visualise.html.jinja'
+    templatename = 'blast_html.html.jinja'
 
     def __init__(self, input):
         self.input = input