Mercurial > repos > jankanis > blast2html
changeset 110:e17aae23cc1c
report query parameters for each query
| author | Jan Kanis <jan.code@jankanis.nl> |
|---|---|
| date | Wed, 09 Jul 2014 15:04:37 +0200 |
| parents | ea3bc0b9a3d9 |
| children | 7aa28753d7b3 |
| files | blast2html.html.jinja blast2html.py |
| diffstat | 2 files changed, 20 insertions(+), 5 deletions(-) [+] |
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--- a/blast2html.html.jinja Tue Jul 08 17:51:22 2014 +0200 +++ b/blast2html.html.jinja Wed Jul 09 15:04:37 2014 +0200 @@ -396,6 +396,18 @@ {% else %} + <section class=header> + + <h1>Nucleotide Blast results</h1> + + <table class=headerdata> + {% for param, value in params %} + <tr><td class=param>{{param}}:</td><td>{{value}}</td></tr> + {% endfor %} + </table> + + </section> + {% if blast.BlastOutput_iterations.findall('Iteration') | length > 1 %} <section class=index> <h1>Queries</h1> @@ -420,7 +432,7 @@ <section class=header> <table class=headerdata> - {% for param, value in params %} + {% for param, value in result|params %} <tr><td class=param>{{param}}:</td><td>{{value}}</td></tr> {% endfor %} </table>
--- a/blast2html.py Tue Jul 08 17:51:22 2014 +0200 +++ b/blast2html.py Wed Jul 09 15:04:37 2014 +0200 @@ -224,6 +224,12 @@ key=lambda h: max(blastxml_len(hsp) for hsp in h.Hit_hsps.Hsp), reverse=True) +@filter('params') +def result_params(iteration): + return (('Query number', iteration['Iteration_iter-num']), + ('Query ID', iteration['Iteration_query-ID']), + ('Definition line', iteration['Iteration_query-def']), + ('Length', blastxml_len(iteration))) class BlastVisualize: @@ -258,10 +264,7 @@ def render(self, output): template = self.environment.get_template(self.templatename) - params = (('Query ID', self.blast["BlastOutput_query-ID"]), - ('Query definition', self.blast["BlastOutput_query-def"]), - ('Query length', self.blast["BlastOutput_query-len"]), - ('Program', self.blast.BlastOutput_version), + params = (('Program', self.blast.BlastOutput_version), ('Database', self.blast.BlastOutput_db), )