| Thu, 31 Jul 2014 16:49:27 +0200 |
Jan Kanis |
close branch
py2.6
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| Thu, 31 Jul 2014 16:14:36 +0200 |
Jan Kanis |
Fix for Rikilt issue 13
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| Thu, 31 Jul 2014 13:26:34 +0200 |
Jan Kanis |
tentative fix for Rikilt issue 10: don't sort hits ourselves but use blastxml ordering
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| Thu, 31 Jul 2014 13:09:30 +0200 |
Jan Kanis |
fix for Rikilt issues 8, 11, 12, 14
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| Thu, 31 Jul 2014 14:55:07 +0200 |
Jan Kanis |
increase version to 0.0.14
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| Mon, 14 Jul 2014 15:47:48 +0200 |
Jan Kanis |
refactor
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| Mon, 14 Jul 2014 15:01:32 +0200 |
Jan Kanis |
make external gene bank name configurable
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| Wed, 09 Jul 2014 15:20:38 +0200 |
Jan Kanis |
update test results
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| Wed, 09 Jul 2014 15:19:53 +0200 |
Jan Kanis |
adjust header size
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| Wed, 09 Jul 2014 15:17:58 +0200 |
Jan Kanis |
create document-wide h1 header, put other headers one size down
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| Wed, 09 Jul 2014 15:17:14 +0200 |
Jan Kanis |
create document-wide h1 header, put other headers one size down
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| Wed, 09 Jul 2014 15:04:37 +0200 |
Jan Kanis |
report query parameters for each query
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| Tue, 08 Jul 2014 17:51:22 +0200 |
Jan Kanis |
fix (again) output encoding
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| Tue, 08 Jul 2014 17:05:54 +0200 |
Jan Kanis |
update version to 0.0.12
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| Mon, 07 Jul 2014 12:20:28 +0200 |
Jan Kanis |
minor fix
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| Mon, 07 Jul 2014 11:50:50 +0200 |
Jan Kanis |
add new test files
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| Mon, 07 Jul 2014 11:42:43 +0200 |
Jan Kanis |
update test
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| Mon, 07 Jul 2014 11:29:10 +0200 |
Jan Kanis |
stream output
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| Tue, 01 Jul 2014 17:18:09 +0200 |
Jan Kanis |
improve warning messages
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| Tue, 01 Jul 2014 16:54:32 +0200 |
Jan Kanis |
fix error
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| Tue, 01 Jul 2014 16:51:38 +0200 |
Jan Kanis |
better warning message
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| Tue, 01 Jul 2014 16:23:29 +0200 |
Jan Kanis |
add --db-config-dir switch to wrapper; update version number
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| Tue, 01 Jul 2014 16:00:29 +0200 |
Jan Kanis |
look at all blast*.loc files; python2.6 compat fix
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| Mon, 30 Jun 2014 17:51:56 +0200 |
Jan Kanis |
test new command line parameters, fix small bug
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| Mon, 30 Jun 2014 17:31:26 +0200 |
Jan Kanis |
update tests
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| Mon, 30 Jun 2014 17:31:10 +0200 |
Jan Kanis |
fix bug; add comments
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| Mon, 30 Jun 2014 16:49:45 +0200 |
Jan Kanis |
implement configurable gene bank links
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| Tue, 24 Jun 2014 18:51:26 +0200 |
Jan Kanis |
Backed out broken changeset 15b289ffdf2b
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| Tue, 24 Jun 2014 18:25:00 +0200 |
Jan Kanis |
try to install lxml within setup_virtualenv (probably fails)
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| Tue, 24 Jun 2014 18:12:19 +0200 |
Jan Kanis |
update to latest zlib, remove workaround for missing zlib env variable
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| Tue, 24 Jun 2014 17:59:12 +0200 |
Jan Kanis |
fix LD_LIBRARY_PATH
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| Tue, 24 Jun 2014 17:13:41 +0200 |
Jan Kanis |
add LIBRARY_PATH variable
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| Tue, 24 Jun 2014 17:07:46 +0200 |
Jan Kanis |
add zlib dependency
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| Tue, 24 Jun 2014 16:49:05 +0200 |
Jan Kanis |
merge py2.6 branch
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| Tue, 24 Jun 2014 16:46:18 +0200 |
Jan Kanis |
(attempt to) get lxml install working
py2.6
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| Tue, 24 Jun 2014 11:20:24 +0200 |
Jan Kanis |
add missing dependencies
py2.6
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| Tue, 24 Jun 2014 11:14:52 +0200 |
Jan Kanis |
re-include backed out revisions and update version numbers
py2.6
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| Tue, 24 Jun 2014 11:00:57 +0200 |
Jan Kanis |
Backed out changesets 0b5819dc1478 and 3338571b44cd to create new release version
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| Mon, 23 Jun 2014 17:46:26 +0200 |
Jan Kanis |
fix lxml version
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| Mon, 23 Jun 2014 17:11:58 +0200 |
Jan Kanis |
first attempt at running on python 2.6
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| Thu, 19 Jun 2014 17:00:29 +0200 |
Jan Kanis |
merge py2.6 branch
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| Thu, 19 Jun 2014 16:59:58 +0200 |
Jan Kanis |
Close branch
py2.6
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| Thu, 19 Jun 2014 16:43:22 +0200 |
Jan Kanis |
remove unneeded encoding parameter
py2.6
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| Thu, 19 Jun 2014 16:29:33 +0200 |
Jan Kanis |
comment
py2.6
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| Thu, 19 Jun 2014 14:17:09 +0200 |
Jan Kanis |
update test output
py2.6
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| Thu, 19 Jun 2014 14:07:00 +0200 |
Jan Kanis |
Format all numbers in a predictable way
py2.6
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| Wed, 18 Jun 2014 17:50:32 +0200 |
Jan Kanis |
Fix rounding errors
py2.6
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| Wed, 18 Jun 2014 16:58:25 +0200 |
Jan Kanis |
fix escaping of javascript literals
py2.6
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| Wed, 18 Jun 2014 16:21:45 +0200 |
Jan Kanis |
First go at 2.6 compatibility
py2.6
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| Wed, 18 Jun 2014 14:33:12 +0200 |
Jan Kanis |
doc changes
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| Wed, 18 Jun 2014 14:23:15 +0200 |
Jan Kanis |
refactor
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| Wed, 18 Jun 2014 14:22:57 +0200 |
Jan Kanis |
Modify test data to include a negative frame sequence that is split in multiple lines
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| Wed, 18 Jun 2014 14:12:00 +0200 |
Jan Kanis |
handle reverse matches
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| Wed, 18 Jun 2014 12:25:37 +0200 |
Jan Kanis |
fix bug in calculations of alignment end
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| Tue, 17 Jun 2014 18:07:02 +0200 |
Jan Kanis |
wrap alignments if they are too long
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| Wed, 04 Jun 2014 16:28:45 +0200 |
Jan Kanis |
fix input format
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| Wed, 04 Jun 2014 16:03:12 +0200 |
Jan Kanis |
depend on modified libxml2 that exports LD_LIBRARY_PATH
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| Tue, 03 Jun 2014 16:12:50 +0200 |
Jan Kanis |
work around missing ld library path for libxml
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| Wed, 28 May 2014 16:55:11 +0200 |
Jan Kanis |
depend on fixed python3
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| Wed, 28 May 2014 14:02:38 +0200 |
Jan Kanis |
Undo including $ENV[PYTHONPATH] in PYTHONPATH
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| Wed, 28 May 2014 12:02:42 +0200 |
Jan Kanis |
bump version
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| Wed, 28 May 2014 11:39:36 +0200 |
Jan Kanis |
depend on latest python3, add $ENV[PYTHONPATH] to PYTHONPATH
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| Tue, 27 May 2014 12:50:52 +0200 |
Jan Kanis |
update tests
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| Tue, 27 May 2014 12:45:50 +0200 |
Jan Kanis |
set other environment variables as well
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| Mon, 26 May 2014 15:34:54 +0200 |
Jan Kanis |
depend on new python3; set LD_LIBRARY_PATH
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| Mon, 26 May 2014 14:20:17 +0200 |
Jan Kanis |
fix interpreter setting
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| Mon, 26 May 2014 14:10:48 +0200 |
Jan Kanis |
fix depended repository name
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| Mon, 26 May 2014 13:14:39 +0200 |
Jan Kanis |
add changeset revision in xml
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| Mon, 26 May 2014 13:07:13 +0200 |
Jan Kanis |
depend on python 3; fix internal links with multiple iterations
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| Wed, 21 May 2014 18:39:51 +0200 |
Jan Kanis |
minor fix
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| Wed, 21 May 2014 18:34:35 +0200 |
Jan Kanis |
fix python 2 compatibility
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| Wed, 21 May 2014 18:17:03 +0200 |
Jan Kanis |
unicodify python sources
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| Tue, 20 May 2014 16:19:05 +0200 |
Jan Kanis |
debug action
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| Tue, 20 May 2014 15:45:23 +0200 |
Jan Kanis |
fix prior_installation_required flag
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| Tue, 20 May 2014 15:43:16 +0200 |
Jan Kanis |
add prior_installation_required flag
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| Tue, 20 May 2014 15:22:28 +0200 |
Jan Kanis |
change tool_dependencies.xml
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| Tue, 20 May 2014 15:10:08 +0200 |
Jan Kanis |
move dependency on blast_datatypes back to repository_dependencies.xml
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| Tue, 20 May 2014 15:04:54 +0200 |
Jan Kanis |
add dependency on cython
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| Tue, 20 May 2014 14:56:10 +0200 |
Jan Kanis |
another attempt at getting dependencies right
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| Mon, 19 May 2014 18:34:25 +0200 |
Jan Kanis |
update version
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| Mon, 19 May 2014 18:22:24 +0200 |
Jan Kanis |
more dependency updates, now including the python package dependencies
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| Mon, 19 May 2014 15:52:52 +0200 |
Jan Kanis |
further update dependency information, hope it works now
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| Mon, 19 May 2014 15:09:55 +0200 |
Jan Kanis |
update dependency
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| Mon, 19 May 2014 14:41:55 +0200 |
Jan Kanis |
add repository dependency; add <stdio> tag; update version
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| Thu, 15 May 2014 18:24:15 +0200 |
Jan Kanis |
add argparse dependency for python <2.7 and update version
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| Thu, 15 May 2014 18:22:49 +0200 |
Jan Kanis |
add argparse dependency for python <2.7
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| Thu, 15 May 2014 18:15:04 +0200 |
Jan Kanis |
fix tool xml file name
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| Thu, 15 May 2014 18:08:27 +0200 |
Jan Kanis |
update version
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| Thu, 15 May 2014 17:29:44 +0200 |
Jan Kanis |
add test update script, add url to github page
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| Thu, 15 May 2014 17:22:02 +0200 |
Jan Kanis |
fix tests
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| Thu, 15 May 2014 16:59:18 +0200 |
Jan Kanis |
rename NCBI reference example
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| Thu, 15 May 2014 16:53:04 +0200 |
Jan Kanis |
remove unneeded files
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| Thu, 15 May 2014 16:50:38 +0200 |
Jan Kanis |
reorganise to match galaxy tool shed layout
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| Thu, 15 May 2014 16:46:30 +0200 |
Jan Kanis |
add blast2html.xml config setting
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| Thu, 15 May 2014 16:46:09 +0200 |
Jan Kanis |
improve the galaxy html stripping warning; make sure the tool can find the template from within galaxy
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| Thu, 15 May 2014 12:44:44 +0200 |
Jan Kanis |
add a warning if galaxy strips the html header/stylesheet
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| Thu, 15 May 2014 12:24:02 +0200 |
Jan Kanis |
add more example xmls, move them to a subdirectory
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| Thu, 15 May 2014 12:12:21 +0200 |
Jan Kanis |
use Iteration_message tag; also work with unexpected Hit_id values
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| Thu, 15 May 2014 11:05:39 +0200 |
Jan Kanis |
fix sectioning, add footer
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| Thu, 15 May 2014 10:48:09 +0200 |
Jan Kanis |
rename blast2html
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| Thu, 15 May 2014 10:45:34 +0200 |
Jan Kanis |
style changes
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| Wed, 14 May 2014 16:20:29 +0200 |
Jan Kanis |
Add index for multiple results; fix layout of query ruler for edge case
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| Tue, 13 May 2014 18:06:36 +0200 |
Jan Kanis |
make it work with multiple queries
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| Tue, 13 May 2014 15:26:20 +0200 |
Jan Kanis |
add a parameter for the template
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| Tue, 13 May 2014 12:54:03 +0200 |
Jan Kanis |
make html more semantic
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| Tue, 13 May 2014 12:22:35 +0200 |
Jan Kanis |
fix validation, reindent
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| Mon, 12 May 2014 17:33:08 +0200 |
Jan Kanis |
minor update
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| Mon, 12 May 2014 17:32:01 +0200 |
Jan Kanis |
small bugfixes (one for python 3.4)
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| Mon, 12 May 2014 17:13:49 +0200 |
Jan Kanis |
renamed files
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| Mon, 12 May 2014 17:12:24 +0200 |
Jan Kanis |
add links, refactor, proper commandline arguments
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| Mon, 12 May 2014 13:55:04 +0200 |
Jan Kanis |
proper layout for alignments, added some links
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| Fri, 09 May 2014 18:16:48 +0200 |
Jan Kanis |
All data is displayed now, still some formatting to do
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| Thu, 08 May 2014 18:59:32 +0200 |
Jan Kanis |
fix descriptiontable width
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| Thu, 08 May 2014 17:33:41 +0200 |
Jan Kanis |
div-ified graphics
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| Thu, 08 May 2014 16:51:52 +0200 |
Jan Kanis |
intermediate commit before converting some tables to divs
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| Wed, 07 May 2014 19:02:20 +0200 |
Jan Kanis |
slight update
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| Wed, 07 May 2014 18:49:54 +0200 |
Jan Kanis |
first features are working, partial match table
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| Tue, 06 May 2014 17:52:14 +0200 |
Jan Kanis |
trim everything that can be without breaking the graphics summary
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| Tue, 06 May 2014 17:47:16 +0200 |
Jan Kanis |
undo trimming that broke the graphics summary
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| Tue, 06 May 2014 17:41:24 +0200 |
Jan Kanis |
more trimming down
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