changeset 0:e9407b729a69 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu May 22 05:58:18 2014 -0400
@@ -0,0 +1,52 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="openssl" version="1.0.1g">
+    <repository changeset_revision="e459a9ce3fce" name="package_openssl" owner="jankanis" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
+  </package>
+
+  <package name="python3" version="3.4.1">
+    <install version="1.0">
+      <actions>
+	<action type="download_by_url">https://www.python.org/ftp/python/3.4.1/Python-3.4.1.tgz</action>
+        <action type="set_environment_for_install">
+          <repository changeset_revision="e459a9ce3fce" name="package_openssl" owner="jankanis" toolshed="http://toolshed.g2.bx.psu.edu">
+            <package name="openssl" version="1.0.1g" />
+          </repository>
+        </action>
+	<action type="autoconf">--prefix=$INSTALL_DIR</action>
+	<action type="set_environment">
+	  <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+	  <!-- empty PYTHONPATH, otherwise we will get Galaxy's Python 2 libraries in the Python 3 path-->
+	  <environment_variable action="set_to" name="PYTHONPATH" />
+	  <environment_variable action="set_to" name="PYTHONHOME">$INSTALL_DIR</environment_variable>
+	</action>
+      </actions>
+    </install>
+
+    <readme>
+      Python 3.4.1. Configured with the default settings, using --prefix=$INSTALL_DIR.
+
+      Python as of version 3.3 includes a built-in virtual environment manager. To create a python 3 virtual env, include the following actions in your tool_dependencies.xml:
+
+      &lt;action type="set_environment_for_install"&gt;
+	&lt;repository name="python3" owner="jankanis"&gt;
+          &lt;package name="python3" version="3.4.1" /&gt;
+	&lt;/repository&gt;
+      &lt;/action&gt;
+      &lt;action type="shell_command"&gt;
+	# Unset any saved environment settings from parent virtual
+	# environments, e.g. for python 2 or if Galaxy itself is running
+	# from within a virtual environment.
+	unset _OLD_VIRTUAL_PATH; unset _OLD_VIRTUAL_PYTHONHOME
+	pyvenv {{$MY_PACKAGE_NAME}}
+	. {{$MY_PACKAGE_NAME}}/bin/activate
+	pip install {{$PYTHON-PACKAGE}}
+      &lt;/action&gt;
+      &lt;action type="set_environment"&gt;
+	&lt;environment_variable name="PYTHONPATH" action="prepend_to"&gt;$INSTALL_DIR/lib/python3.4/site-packages:$INSTALL_DIR/lib64/python3.4/iste-packages&lt;/environment_variable&gt;
+      &lt;/action&gt;
+
+    </readme>
+    
+  </package>
+</tool_dependency>