annotate seqgen_wrapper.xml @ 3:daa8ab01b526 draft default tip

Uploaded
author jaredgk
date Thu, 08 Nov 2018 17:11:47 -0500
parents bd41ac1e76a3
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
0eb594cb30d7 Uploaded
jaredgk
parents:
diff changeset
1 <tool id="seqgen" name="Seqgen" version="1.0.0">
0eb594cb30d7 Uploaded
jaredgk
parents:
diff changeset
2 <description>simulate evolutionary events given gene trees</description>
0eb594cb30d7 Uploaded
jaredgk
parents:
diff changeset
3 <requirements>
0eb594cb30d7 Uploaded
jaredgk
parents:
diff changeset
4 <requirement type="package">seq-gen</requirement>
0eb594cb30d7 Uploaded
jaredgk
parents:
diff changeset
5 </requirements>
3
daa8ab01b526 Uploaded
jaredgk
parents: 2
diff changeset
6 <stdio>
daa8ab01b526 Uploaded
jaredgk
parents: 2
diff changeset
7 <exit_code range="1:" level="fatal" />
daa8ab01b526 Uploaded
jaredgk
parents: 2
diff changeset
8 </stdio>
0
0eb594cb30d7 Uploaded
jaredgk
parents:
diff changeset
9 <command><![CDATA[
1
d287665be044 Uploaded
jaredgk
parents: 0
diff changeset
10 seq-gen -m HKY < $input > $output
0
0eb594cb30d7 Uploaded
jaredgk
parents:
diff changeset
11
0eb594cb30d7 Uploaded
jaredgk
parents:
diff changeset
12 ]]></command>
0eb594cb30d7 Uploaded
jaredgk
parents:
diff changeset
13 <inputs>
0eb594cb30d7 Uploaded
jaredgk
parents:
diff changeset
14 <param type="data" name="input" label="Tree file" />
0eb594cb30d7 Uploaded
jaredgk
parents:
diff changeset
15 </inputs>
0eb594cb30d7 Uploaded
jaredgk
parents:
diff changeset
16 <outputs>
2
bd41ac1e76a3 Uploaded
jaredgk
parents: 1
diff changeset
17 <data name="output" format="txt" />
0
0eb594cb30d7 Uploaded
jaredgk
parents:
diff changeset
18 </outputs>
0eb594cb30d7 Uploaded
jaredgk
parents:
diff changeset
19
0eb594cb30d7 Uploaded
jaredgk
parents:
diff changeset
20 </tool>