Mercurial > repos > jasonk > package_metavelvet_sl_1_0
comparison tool_dependencies.xml @ 5:7f26c8ea8c54 draft
Uploaded
| author | jasonk |
|---|---|
| date | Wed, 18 Jan 2017 01:37:10 -0500 |
| parents | 8394553167b6 |
| children | f48a68e4ad50 |
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| 4:8394553167b6 | 5:7f26c8ea8c54 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="metavelvet_sl" version="1.0"> | 3 <package name="metavelvet_sl" version="1.0"> |
| 4 <install version="1.0"> | 4 <install version="1.0"> |
| 5 <actions> | 5 <actions> |
| 6 <action type="download_by_url">http://metavelvet.dna.bio.keio.ac.jp/srcSL/MetaVelvetSLv1.0.tar.gz</action> | 6 <action type="download_by_url">http://metavelvet.dna.bio.keio.ac.jp/srcSL/MetaVelvetSLv1.0.tar.gz</action> |
| 7 <action type="shell_command">make MAXKMERLENGTH=128 CATEGORIES=3</action> | 7 <action type="shell_command">make MAXKMERLENGTH=128 CATEGORIES=3</action> |
| 8 <action type="move_file"> | 8 <action type="move_file"> |
| 9 <source>meta-velvete</source> | 9 <source>meta-velvete</source> |
| 10 <destination>$INSTALL_DIR</destination> | 10 <destination>$INSTALL_DIR</destination> |
| 12 <action type="move_file"> | 12 <action type="move_file"> |
| 13 <source>meta-velvetg</source> | 13 <source>meta-velvetg</source> |
| 14 <destination>$INSTALL_DIR</destination> | 14 <destination>$INSTALL_DIR</destination> |
| 15 </action> | 15 </action> |
| 16 </actions> | 16 </actions> |
| 17 | |
| 17 <actions> | 18 <actions> |
| 18 <action type="download_by_url">http://www.csie.ntu.edu.tw/~cjlin/cgi-bin/libsvm.cgi?+http://www.csie.ntu.edu.tw/~cjlin/libsvm+tar.gz</action> | 19 <action type="download_by_url">http://www.csie.ntu.edu.tw/~cjlin/cgi-bin/libsvm.cgi?+http://www.csie.ntu.edu.tw/~cjlin/libsvm+tar.gz</action> |
| 19 <action type="change_directory">libsvm*</action> | 20 <action type="change_directory">libsvm*</action> |
| 20 <action type="shell_command">make</action> | 21 <action type="shell_command">make</action> |
| 21 <action type="move_file"> | 22 <action type="move_file"> |
| 29 | 30 |
| 30 <action type="move_file"> | 31 <action type="move_file"> |
| 31 <source>svm-scale</source> | 32 <source>svm-scale</source> |
| 32 <destination>$INSTALL_DIR</destination> | 33 <destination>$INSTALL_DIR</destination> |
| 33 </action> | 34 </action> |
| 35 </actions> | |
| 36 | |
| 37 <actions> | |
| 38 <action type="download_by_url">http://metavelvet.dna.bio.keio.ac.jp/srcSL/LearningModelFeatures.tar.gz</action> | |
| 39 <action type="change_directory">LearningModelFeatures</action> | |
| 40 <action type="move_file"> | |
| 41 <source>*</source> | |
| 42 <destination>$INSTALL_DIR</destination> | |
| 43 </action> | |
| 44 </actions> | |
| 45 | |
| 46 <actions> | |
| 47 <action type="download_by_url">http://metavelvet.dna.bio.keio.ac.jp/srcSL/LibraryPretrainedClassification.tar.gz</action> | |
| 48 <action type="change_directory">LibraryPretrainedClassification</action> | |
| 49 <action type="move_file"> | |
| 50 <source>*.scale</source> | |
| 51 <destination>$INSTALL_DIR</destination> | |
| 52 </action> | |
| 53 <action type="move_file"> | |
| 54 <source>*.model</source> | |
| 55 <destination>$INSTALL_DIR</destination> | |
| 56 </action> | |
| 34 <action type="set_environment"> | 57 <action type="set_environment"> |
| 35 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | 58 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> |
| 36 </action> | 59 </action> |
| 37 </actions> | 60 </actions> |
| 38 | |
| 39 | |
| 40 | 61 |
| 41 </install> | 62 </install> |
| 42 </package> | 63 </package> |
| 43 </tool_dependency> | 64 </tool_dependency> |