diff tool_dependencies.xml @ 3:099aaf4d1b2e draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Jan 18 01:16:28 2017 -0500
@@ -0,0 +1,42 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="metavelvet_sl" version="1.0">
+  <install version="1.0">
+      <actions>
+    <action type="download_by_url">http://metavelvet.dna.bio.keio.ac.jp/srcSL/MetaVelvetSLv1.0.tar.gz</action>
+    <action type="shell_command">make MAXKMERLENGTH=128 CATEGORIES=3</action>
+    <action type="move_file">
+                        <source>meta-velvete</source>
+                        <destination>$INSTALL_DIR</destination>
+                </action>
+    <action type="move_file">
+                        <source>meta-velvetg</source>
+                        <destination>$INSTALL_DIR</destination>
+                </action>
+    
+    <action type="download_by_url">http://www.csie.ntu.edu.tw/~cjlin/cgi-bin/libsvm.cgi?+http://www.csie.ntu.edu.tw/~cjlin/libsvm+tar.gz</action>
+    <action type="change_directory">libsvm*</action>
+    <action type="shell_command">make</action>
+    <action type="move_file">
+                        <source>svm-predict</source>
+                        <destination>$INSTALL_DIR</destination>
+                </action>
+    <action type="move_file">
+                        <source>svm-train</source>
+                        <destination>$INSTALL_DIR</destination>
+                </action>
+
+    <action type="move_file">
+                        <source>svm-scale</source>
+                        <destination>$INSTALL_DIR</destination>
+                </action>
+                <action type="set_environment">
+                        <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                </action>
+    </actions>
+
+
+    
+         </install>
+    </package>
+</tool_dependency>