Mercurial > repos > jasonk > package_metavelvet_sl_1_0

diff tool_dependencies.xml @ 5:7f26c8ea8c54 draft

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Uploaded
author jasonk
date Wed, 18 Jan 2017 01:37:10 -0500
parents 8394553167b6
children f48a68e4ad50
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Jan 18 01:24:48 2017 -0500
+++ b/tool_dependencies.xml	Wed Jan 18 01:37:10 2017 -0500
@@ -2,7 +2,7 @@
 <tool_dependency>
     <package name="metavelvet_sl" version="1.0">
   <install version="1.0">
-      <actions>
+    <actions>
     <action type="download_by_url">http://metavelvet.dna.bio.keio.ac.jp/srcSL/MetaVelvetSLv1.0.tar.gz</action>
     <action type="shell_command">make MAXKMERLENGTH=128 CATEGORIES=3</action>
     <action type="move_file">
@@ -14,6 +14,7 @@
                         <destination>$INSTALL_DIR</destination>
                 </action>
     </actions>
+
     <actions>
     <action type="download_by_url">http://www.csie.ntu.edu.tw/~cjlin/cgi-bin/libsvm.cgi?+http://www.csie.ntu.edu.tw/~cjlin/libsvm+tar.gz</action>
     <action type="change_directory">libsvm*</action>
@@ -31,12 +32,32 @@
                         <source>svm-scale</source>
                         <destination>$INSTALL_DIR</destination>
                 </action>
+    </actions>
+
+    <actions>
+    <action type="download_by_url">http://metavelvet.dna.bio.keio.ac.jp/srcSL/LearningModelFeatures.tar.gz</action>
+    <action type="change_directory">LearningModelFeatures</action>
+    <action type="move_file">
+                        <source>*</source>
+                        <destination>$INSTALL_DIR</destination>
+                </action>
+    </actions>
+
+    <actions>
+    <action type="download_by_url">http://metavelvet.dna.bio.keio.ac.jp/srcSL/LibraryPretrainedClassification.tar.gz</action>
+    <action type="change_directory">LibraryPretrainedClassification</action>
+    <action type="move_file">
+                        <source>*.scale</source>
+                        <destination>$INSTALL_DIR</destination>
+                </action>
+    <action type="move_file">
+                        <source>*.model</source>
+                        <destination>$INSTALL_DIR</destination>
+                </action>
                 <action type="set_environment">
                         <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                 </action>
     </actions>
-
-
     
          </install>
     </package>