Mercurial > repos > jasonk > package_metavelvet_sl_1_0

diff tool_dependencies.xml @ 11:851f322ffedd draft

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Uploaded
author jasonk
date Wed, 18 Jan 2017 02:09:43 -0500
parents 9f78e45e5953
children 20644ed60cad
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Jan 18 02:03:11 2017 -0500
+++ b/tool_dependencies.xml	Wed Jan 18 02:09:43 2017 -0500
@@ -39,15 +39,15 @@
     <action type="change_directory">LearningModelFeatures</action>
     <action type="move_file">
                         <source>FeatureExtract.perl</source>
-                        <destination>$INSTALL_DIR</destination>
+                        <destination>$INSTALL_DIR/LearningModelFeatures</destination>
                 </action>
      <action type="move_file">
                         <source>FeatureExtractPredict.perl</source>
-                        <destination>$INSTALL_DIR</destination>
+                        <destination>$INSTALL_DIR/LearningModelFeatures</destination>
                 </action>
      <action type="move_directory_files">
                         <source_directory>BLAST_map</source_directory>
-                        <destination_directory>$INSTALL_DIR</destination_directory>
+                        <destination_directory>$INSTALL_DIR/LearningModelFeatures/BLAST_map</destination_directory>
                 </action>
     </actions>
    
@@ -55,14 +55,14 @@
     <actions>
     <action type="download_by_url">http://metavelvet.dna.bio.keio.ac.jp/srcSL/LibraryPretrainedClassification.tar.gz</action>
     <!-- <action type="change_directory">LibraryPretrainedClassification</action> -->
-    <action type="move_directory_files">
-                        <source_directory>LibraryPretrainedClassification</source_directory>
-                        <destination_directory>$INSTALL_DIR</destination_directory>
+    <action type="move_file">
+                        <source>LibraryPretrainedClassification/*.scale</source>
+                        <destination>$INSTALL_DIR/LibraryPretrainedClassification</destination>
                 </action>
-    <!-- <action type="move_file">
-                        <source>*.model</source>
-                        <destination>$INSTALL_DIR</destination>
-                </action> -->
+    <action type="move_file">
+                        <source>LibraryPretrainedClassification/*.model</source>
+                        <destination>$INSTALL_DIR/LibraryPretrainedClassification</destination>
+                </action>
                 <action type="set_environment">
                         <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                 </action>