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comparison ml_tool/test-data/test_metadata.tsv @ 0:76a728a52df6 draft default tip

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planemo upload for repository https://github.com/jaidevjoshi83/MicroBiomML commit 5ef78d4decc95ac107c468499328e7f086289ff9-dirty
author jay
date Tue, 17 Feb 2026 10:52:45 +0000
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-1:000000000000 0:76a728a52df6
1 sample_id study_name subject_id body_site study_condition disease age_category country non_westernized sequencing_platform DNA_extraction_kit PMID number_reads number_bases minimum_read_length median_read_length NCBI_accession curator protein_intake
2 SRR3992955 LiuW_2016 SRR3992955 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 78376762 11756514300 150 150 SRR3992955 Paolo_Manghi 125.1
3 SRR3992956 LiuW_2016 SRR3992956 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 43599100 6539865000 150 150 SRR3992956 Paolo_Manghi 128.12
4 SRR3992957 LiuW_2016 SRR3992957 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 34782688 5217403200 150 150 SRR3992957 Paolo_Manghi 166.7
5 SRR3992958 LiuW_2016 SRR3992958 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 54269420 8140413000 150 150 SRR3992958 Paolo_Manghi 78.52
6 SRR3992959 LiuW_2016 SRR3992959 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 64648644 9697296600 150 150 SRR3992959 Paolo_Manghi 89.74
7 SRR3992960 LiuW_2016 SRR3992960 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 40220748 6033112200 150 150 SRR3992960 Paolo_Manghi 104.16
8 SRR3992961 LiuW_2016 SRR3992961 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 82546276 12009412152 126 150 SRR3992961 Paolo_Manghi 76.12
9 SRR3992962 LiuW_2016 SRR3992962 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 65661186 9663515484 126 150 SRR3992962 Paolo_Manghi 82.53
10 SRR3992963 LiuW_2016 SRR3992963 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 44154270 6459391572 126 150 SRR3992963 Paolo_Manghi 93.74
11 SRR3992964 LiuW_2016 SRR3992964 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 32447746 4867161900 150 150 SRR3992964 Paolo_Manghi 86.53
12 SRR3992965 LiuW_2016 SRR3992965 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 88086108 13212916200 150 150 SRR3992965 Paolo_Manghi 105.76
13 SRR3992966 LiuW_2016 SRR3992966 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 43384542 6507681300 150 150 SRR3992966 Paolo_Manghi 70.51
14 SRR3992967 LiuW_2016 SRR3992967 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 62844638 9426695700 150 150 SRR3992967 Paolo_Manghi 97.75
15 SRR3992968 LiuW_2016 SRR3992968 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 43738436 6560765400 150 150 SRR3992968 Paolo_Manghi 99.65
16 SRR3992969 LiuW_2016 SRR3992969 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 107831094 16018041780 126 150 SRR3992969 Paolo_Manghi 208.83
17 SRR3992970 LiuW_2016 SRR3992970 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 41504748 6168729624 126 150 SRR3992970 Paolo_Manghi 147.1
18 SRR3992971 LiuW_2016 SRR3992971 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 62024590 8543619274 125 150 SRR3992971 Paolo_Manghi 156.55
19 SRR3992972 LiuW_2016 SRR3992972 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 42672324 6400848600 150 150 SRR3992972 Paolo_Manghi 159.5
20 SRR3992973 LiuW_2016 SRR3992973 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 130254616 19538192400 150 150 SRR3992973 Paolo_Manghi 134.2
21 SRR3992974 LiuW_2016 SRR3992974 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 38469236 5770385400 150 150 SRR3992974 Paolo_Manghi 209.86
22 SRR3992975 LiuW_2016 SRR3992975 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 37260382 5589057300 150 150 SRR3992975 Paolo_Manghi 111.2
23 SRR3992976 LiuW_2016 SRR3992976 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 37093368 5564005200 150 150 SRR3992976 Paolo_Manghi 124.6
24 SRR3992977 LiuW_2016 SRR3992977 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 36293988 5444098200 150 150 SRR3992977 Paolo_Manghi 216.2
25 SRR3992978 LiuW_2016 SRR3992978 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 63939470 9027440026 125 150 SRR3992978 Paolo_Manghi 167.8
26 SRR3992979 LiuW_2016 SRR3992979 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 42545206 6381780900 150 150 SRR3992979 Paolo_Manghi 117.8
27 SRR3992980 LiuW_2016 SRR3992980 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 50954622 7246675442 125 150 SRR3992980 Paolo_Manghi 46.85
28 SRR3992981 LiuW_2016 SRR3992981 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 58568686 8150639550 125 150 SRR3992981 Paolo_Manghi 101.95
29 SRR3992982 LiuW_2016 SRR3992982 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 35619256 5318867328 126 150 SRR3992982 Paolo_Manghi 56.05
30 SRR3992983 LiuW_2016 SRR3992983 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 39630138 5944520700 150 150 SRR3992983 Paolo_Manghi 304.4
31 SRR3992984 LiuW_2016 SRR3992984 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 50284672 7173167082 125 150 SRR3992984 Paolo_Manghi 108.95
32 SRR3992985 LiuW_2016 SRR3992985 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 110446032 15917332176 126 150 SRR3992985 Paolo_Manghi 81.3
33 SRR3992986 LiuW_2016 SRR3992986 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 46408432 6828053616 126 150 SRR3992986 Paolo_Manghi 418
34 SRR3992987 LiuW_2016 SRR3992987 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 181557884 22876293384 126 126 SRR3992987 Paolo_Manghi 95.05
35 SRR3992988 LiuW_2016 SRR3992988 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 44247666 6637149900 150 150 SRR3992988 Paolo_Manghi 87
36 SRR3992989 LiuW_2016 SRR3992989 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 42365764 6026353950 125 150 SRR3992989 Paolo_Manghi 158.54
37 SRR3992990 LiuW_2016 SRR3992990 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 67393674 10109051100 150 150 SRR3992990 Paolo_Manghi 126.07
38 SRR3992991 LiuW_2016 SRR3992991 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 193607438 28769574948 126 150 SRR3992991 Paolo_Manghi 123.55
39 SRR3992992 LiuW_2016 SRR3992992 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 32956896 4864216992 126 150 SRR3992992 Paolo_Manghi 83.61
40 SRR3992993 LiuW_2016 SRR3992993 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 72036280 10429200720 126 150 SRR3992993 Paolo_Manghi 134.1
41 SRR3992994 LiuW_2016 SRR3992994 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 40329806 5626804050 125 150 SRR3992994 Paolo_Manghi 202
42 SRR3992995 LiuW_2016 SRR3992995 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 77807568 11548861824 126 150 SRR3992995 Paolo_Manghi 48.68
43 SRR3992996 LiuW_2016 SRR3992996 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 37433788 5235064116 125 150 SRR3992996 Paolo_Manghi 83.07
44 SRR3992997 LiuW_2016 SRR3992997 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 70848376 10373864112 126 150 SRR3992997 Paolo_Manghi 106.5
45 SRR3992998 LiuW_2016 SRR3992998 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 68869128 10215484416 126 150 SRR3992998 Paolo_Manghi 302.95
46 SRR3992999 LiuW_2016 SRR3992999 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 85952440 12892866000 150 150 SRR3992999 Paolo_Manghi 90.6
47 SRR3993000 LiuW_2016 SRR3993000 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 56078692 7550371894 125 125 SRR3993000 Paolo_Manghi 90.03
48 SRR3993001 LiuW_2016 SRR3993001 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 57493562 8624034300 150 150 SRR3993001 Paolo_Manghi 68.7
49 SRR3993002 LiuW_2016 SRR3993002 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 60532296 8225654200 125 125 SRR3993002 Paolo_Manghi 147.27
50 SRR3993003 LiuW_2016 SRR3993003 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 52714170 7357813702 125 150 SRR3993003 Paolo_Manghi 174.5
51 SRR3993004 LiuW_2016 SRR3993004 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 49572892 7435933800 150 150 SRR3993004 Paolo_Manghi 148.6
52 SRR3993005 LiuW_2016 SRR3993005 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 80015598 11924989668 126 150 SRR3993005 Paolo_Manghi 74.9
53 SRR3993006 LiuW_2016 SRR3993006 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 39770632 5965594800 150 150 SRR3993006 Paolo_Manghi 107.55
54 SRR3993007 LiuW_2016 SRR3993007 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 57170972 8390789496 126 150 SRR3993007 Paolo_Manghi 76.7
55 SRR3993008 LiuW_2016 SRR3993008 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 37886052 5682907800 150 150 SRR3993008 Paolo_Manghi 76.2
56 SRR3993009 LiuW_2016 SRR3993009 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 40074110 5849530644 126 150 SRR3993009 Paolo_Manghi 74.1
57 SRR3993010 LiuW_2016 SRR3993010 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 37899142 5684871300 150 150 SRR3993010 Paolo_Manghi 113.1
58 SRR3993011 LiuW_2016 SRR3993011 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 36444756 5408561880 126 150 SRR3993011 Paolo_Manghi 117.4
59 SRR3993012 LiuW_2016 SRR3993012 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 79729538 11749259052 126 150 SRR3993012 Paolo_Manghi 90.4
60 SRR3993013 LiuW_2016 SRR3993013 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 72365638 10754632308 126 150 SRR3993013 Paolo_Manghi 56.4
61 SRR3993014 LiuW_2016 SRR3993014 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 65522780 9828417000 150 150 SRR3993014 Paolo_Manghi 40.6
62 SRR3993015 LiuW_2016 SRR3993015 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 59676656 8951498400 150 150 SRR3993015 Paolo_Manghi 123.65
63 SRR3993016 LiuW_2016 SRR3993016 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 58508914 8657611212 126 150 SRR3993016 Paolo_Manghi 67.4
64 SRR3993017 LiuW_2016 SRR3993017 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 38185330 5727799500 150 150 SRR3993017 Paolo_Manghi 59.85
65 SRR3993018 LiuW_2016 SRR3993018 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 63578668 9189995688 126 150 SRR3993018 Paolo_Manghi 22.8
66 SRR3993019 LiuW_2016 SRR3993019 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 46867926 6945887940 126 150 SRR3993019 Paolo_Manghi 130.5
67 SRR3993020 LiuW_2016 SRR3993020 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 57445366 8434896804 126 150 SRR3993020 Paolo_Manghi 114.3
68 SRR3993021 LiuW_2016 SRR3993021 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 49443318 7416497700 150 150 SRR3993021 Paolo_Manghi 38.95
69 SRR3993022 LiuW_2016 SRR3993022 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 64086092 9558530280 126 150 SRR3993022 Paolo_Manghi 116.1
70 SRR3993023 LiuW_2016 SRR3993023 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 60882172 9066744792 126 150 SRR3993023 Paolo_Manghi 44.7
71 SRR3993024 LiuW_2016 SRR3993024 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 39841842 5852812236 126 150 SRR3993024 Paolo_Manghi 174.85
72 SRR3993025 LiuW_2016 SRR3993025 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 37180160 5577024000 150 150 SRR3993025 Paolo_Manghi 81.11
73 SRR3993026 LiuW_2016 SRR3993026 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 34047852 5102996088 126 150 SRR3993026 Paolo_Manghi 99.14
74 SRR3993027 LiuW_2016 SRR3993027 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 29156322 4351368972 126 150 SRR3993027 Paolo_Manghi 94.63
75 SRR3993028 LiuW_2016 SRR3993028 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 22673124 3400968600 150 150 SRR3993028 Paolo_Manghi 100.04
76 SRR3993029 LiuW_2016 SRR3993029 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 28195206 4229280900 150 150 SRR3993029 Paolo_Manghi 91.93
77 SRR3993030 LiuW_2016 SRR3993030 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 75342254 11301338100 150 150 SRR3993030 Paolo_Manghi 96.43
78 SRR3993031 LiuW_2016 SRR3993031 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 65267646 9790146900 150 150 SRR3993031 Paolo_Manghi 100.04
79 SRR3993032 LiuW_2016 SRR3993032 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 57174816 7693480900 125 125 SRR3993032 Paolo_Manghi 94.5
80 SRR3993033 LiuW_2016 SRR3993033 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 43980074 6597011100 150 150 SRR3993033 Paolo_Manghi 116.26
81 SRR3993034 LiuW_2016 SRR3993034 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 56041196 8406179400 150 150 SRR3993034 Paolo_Manghi 106.35
82 SRR3993035 LiuW_2016 SRR3993035 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 108443032 16266454800 150 150 SRR3993035 Paolo_Manghi 114.46
83 SRR3993036 LiuW_2016 SRR3993036 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 39847704 5977155600 150 150 SRR3993036 Paolo_Manghi 82.91
84 SRR3993037 LiuW_2016 SRR3993037 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 67201156 10080173400 150 150 SRR3993037 Paolo_Manghi 114.46
85 SRR3993038 LiuW_2016 SRR3993038 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 36435938 5465390700 150 150 SRR3993038 Paolo_Manghi 89.22
86 SRR3993039 LiuW_2016 SRR3993039 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 27438600 4115790000 150 150 SRR3993039 Paolo_Manghi 112.65
87 SRR3993040 LiuW_2016 SRR3993040 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 72434026 10865103900 150 150 SRR3993040 Paolo_Manghi 95.53
88 SRR3993041 LiuW_2016 SRR3993041 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 86032132 12904819800 150 150 SRR3993041 Paolo_Manghi 98.23
89 SRR3993042 LiuW_2016 SRR3993042 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 80753778 12113066700 150 150 SRR3993042 Paolo_Manghi 104.54
90 SRR3993043 LiuW_2016 SRR3993043 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 55840912 8376136800 150 150 SRR3993043 Paolo_Manghi 86
91 SRR3993044 LiuW_2016 SRR3993044 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 78685516 11802827400 150 150 SRR3993044 Paolo_Manghi 81.11
92 SRR3993045 LiuW_2016 SRR3993045 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 87820694 13055662644 126 150 SRR3993045 Paolo_Manghi 83.81
93 SRR3993046 LiuW_2016 SRR3993046 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 58766464 8814969600 150 150 SRR3993046 Paolo_Manghi 119.86
94 SRR3993047 LiuW_2016 SRR3993047 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 50485574 7572836100 150 150 SRR3993047 Paolo_Manghi 112.65
95 SRR3993048 LiuW_2016 SRR3993048 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 46672508 6831562872 126 150 SRR3993048 Paolo_Manghi 116.26
96 SRR3993049 LiuW_2016 SRR3993049 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 42885312 6432796800 150 150 SRR3993049 Paolo_Manghi 94.63
97 SRR3993050 LiuW_2016 SRR3993050 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 39917980 5987697000 150 150 SRR3993050 Paolo_Manghi 84.72
98 SRR3993051 LiuW_2016 SRR3993051 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 38697234 5804585100 150 150 SRR3993051 Paolo_Manghi 91.93
99 SRR3993052 LiuW_2016 SRR3993052 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 32202896 4749085968 126 150 SRR3993052 Paolo_Manghi 82.01
100 SRR3993053 LiuW_2016 SRR3993053 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 29835590 4408673652 126 150 SRR3993053 Paolo_Manghi 73.71
101 SRR3993054 LiuW_2016 SRR3993054 stool control healthy adult MNG no IlluminaHiSeq Qiagen 27708392 48978572 7346785800 150 150 SRR3993054 Paolo_Manghi 225.7
102 SRR3993055 LiuW_2016 SRR3993055 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 100450542 14612927028 126 150 SRR3993055 Paolo_Manghi 92.94
103 SRR3993056 LiuW_2016 SRR3993056 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 54392858 8057958780 126 150 SRR3993056 Paolo_Manghi 76.92
104 SRR3993057 LiuW_2016 SRR3993057 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 72633154 10894973100 150 150 SRR3993057 Paolo_Manghi 90.54
105 SRR3993058 LiuW_2016 SRR3993058 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 56474380 8471157000 150 150 SRR3993058 Paolo_Manghi 77.72
106 SRR3993059 LiuW_2016 SRR3993059 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 78443610 11455645452 126 150 SRR3993059 Paolo_Manghi 95.35
107 SRR3993060 LiuW_2016 SRR3993060 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 73467432 10733227584 126 150 SRR3993060 Paolo_Manghi 70.51
108 SRR3993061 LiuW_2016 SRR3993061 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 78786790 11474978388 126 150 SRR3993061 Paolo_Manghi 68.91
109 SRR3993062 LiuW_2016 SRR3993062 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 37437004 5615550600 150 150 SRR3993062 Paolo_Manghi 87.33
110 SRR3993063 LiuW_2016 SRR3993063 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 54129152 8025801600 126 150 SRR3993063 Paolo_Manghi 81.73
111 SRR3993064 LiuW_2016 SRR3993064 stool control healthy adult MNG yes IlluminaHiSeq Qiagen 27708392 37171850 5575777500 150 150 SRR3993064 Paolo_Manghi 79.32