annotate gaiac_data_averaging/gaiac_dataaveraging.xml @ 1:deffa3669ffc draft

planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit a733fec1915a1f6cf5f07092dc33426f765b6cb3-dirty

<tool id="gaiac_data_averaging_tool" name="GAIAC data averaging tool" version="0.1.0">
  <description>Returns average values for time series data as per the selected time interval</description>

  <requirements>
    <requirement type="package" version="3.10">Python</requirement>
    <requirement type="package" version="2.2.5">numpy</requirement>
    <requirement type="package" version="2.2.3">pandas</requirement>
  </requirements>


  <stdio>
    <exit_code range="1" level="fatal" />
  </stdio>

    <command detect_errors="exit_code"><![CDATA[
        python '$__tool_directory__/dataaveraging.py' -I '$input1' -C '$Column' -O '$output' -T '$TimeInt'
    ]]></command>

  <inputs>
    <param name="input1" type="data" label="Input file" format="tabular" argument= "--InFile" help="Input csv data file."/>
    <param name="Column" type='data_column' data_ref="input1"  label="Time Stamp column" argument="--dt_column" multiple="False" use_header_names="true" help="Class Label ex. 0 or 1">

      <validator type="no_options" message="Please select any one column."/>
    </param>


    <param name="TimeInt" label="Time TimeInterval in minutes"  type='text' value="10" argument="--TimeInterval" help="Name of the Column."/>
  </inputs>

  <outputs>
    <data name='output' format='tabular' label="Out.tsv" from_work_dir="out.tsv"/> 
  </outputs>

  <tests>
    <test>
      <param name="input1" value="test.tsv"/>
      <param name="Column" value="1"/>
      <output name="output" file="out.tsv" ftype="tabular"/>
    </test>
  </tests>

   <help><![CDATA[
.. class:: infomark

**What it does**

This tool returns the file with averaged data based on the selected time interval in a time series data.

   

-----

**Inputs**
    Data averaging tool 
       * **--Input file** Input data frame as a tabular file.   
       * **--Time stamp column** select the time stamp column in the dataset from the given list.
       * **--Time interval in minutes** provide the time interval in minutes for which data averaging is to be performed
       
       
    
    

-----

**Outputs**
    * Returns file with averaged data based on the selected time interval]]></help>

<citations>
  <citation type="bibtex">


    @article{dubey2022,
   title={AirPiuG-Galaxy software platform based open-source GUI tools for data collection and analysis from low cost air pollution sensors},
   author={Dubey, R and Joshi, J and Patra, A and Blankenberg, D},
   journal={GitHub repository},
   url = {https://github.com/ravishdubey/OPCN3API},
   year={2022},
   publisher={GitHub}
   }

  </citation>

</citations>

</tool>