diff gaiac_precision_calculation/gaiac_precision_calculation.xml @ 0:287d6cc86582 draft

planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty

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+++ b/gaiac_precision_calculation/gaiac_precision_calculation.xml	Thu May 15 14:45:45 2025 +0000
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+<tool id="gaiac_precision" name="GAIAC precision calculation" version="0.1.0" python_template_version="3.10">
+	<description>Calculates precision between duplicate instruments as per US EPA recommendation</description>
+
+    <requirements>
+      <requirement type="package" version="3.10">Python</requirement>
+      <requirement type="package" version="2.2.5">numpy</requirement>
+      <requirement type="package" version="2.2.3">pandas</requirement>
+      <requirement type="package" version="1.15.2">scipy</requirement>
+    </requirements>
+
+    <command detect_errors="exit_code"><![CDATA[
+        python '$__tool_directory__/precision_calculation.py' -I '$infile' --column_1 '$clm1' --column_2 '$clm2' -o '$Out'  
+    ]]></command>
+
+    <inputs>
+      <param name="infile" type="data" format="tabular" label="Dataset"/>
+      <param name="clm1" label="Select column containing data from first equipment" type="data_column" data_ref="infile" numerical="True" multiple="false" use_header_names="true">
+        <validator type="no_options" message="Please select any one column."/>
+      </param>
+      <param name="clm2" label="Select columns containing data from second equipment " type="data_column" data_ref="infile" numerical="True" multiple="false" use_header_names="true">
+        <validator type="no_options" message="Please select any one column."/>
+      </param>
+    </inputs>
+
+    <outputs>   
+        <data name='Out'  format='tabular' label="out.tsv" from_work_dir="out.tsv"/>
+    </outputs>
+ 
+    <tests>
+      <test>
+        <!-- Provide a test input file -->
+        <param name="infile" value="test.tsv"/>
+        <!-- Select columns by name (assuming columns in CSV are 'Device1' and 'Device2') -->
+        <param name="clm1" value="1"/>
+        <param name="clm2" value="4"/>
+        <!-- Check that the output is created and optionally matches expected output -->
+        <output name="Out" file="out.tsv" ftype="tabular"  />
+      </test>
+    </tests>
+
+   <help><![CDATA[
+.. class:: infomark
+
+**What it does**
+
+This tool calculates Precision  between the duplicate instruments as per the US EPA criteria
+
+   
+
+-----
+
+**Inputs**
+    Precision calculation 
+       * **--infile** Input data frame as a tabular file.   
+       * **--column_1** the column containing data from the first equipment select the column from the list.
+       * **--column_2** the column containing data from the second equipment select the column from the list.
+       
+       
+-----
+
+**Outputs**
+    * Returns precision value between the duplicate instruments]]></help>
+
+<citations>
+  <citation type="bibtex">
+
+
+    @article{dubey2022,
+   title={AirPiuG-Galaxy software platform based open-source GUI tools for data collection and analysis from low cost air pollution sensors},
+   author={Dubey, R and Joshi, J and Patra, A and Blankenberg, D},
+   journal={GitHub repository},
+   url = {https://github.com/ravishdubey/OPCN3API},
+   year={2022},
+   publisher={GitHub}
+   }
+
+  </citation>
+
+</citations>
+</tool>
+
+
+