Mercurial > repos > jay > pdaug_addclasslabel
annotate PDAUG_AddClassLabel/PDAUG_AddClassLabel.xml @ 0:2df11ea23f10 draft
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
author | jay |
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date | Wed, 28 Oct 2020 02:36:27 +0000 |
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2df11ea23f10
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
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1 <tool id="pdaug_addclasslabel" name="PDAUG Add Class Label" version="0.1.0"> |
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"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
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2 <description> Add class label to the training data set</description> |
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3 |
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4 <requirements> |
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5 <requirement type="package" version="2.7.18">python</requirement> |
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6 <requirement type="package" version="0.24.2">pandas</requirement> |
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7 </requirements> |
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8 |
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9 |
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10 <stdio> |
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11 <exit_code range="1" level="fatal" /> |
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12 </stdio> |
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13 |
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14 <command detect_errors="exit_code"><![CDATA[ |
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15 python '$__tool_directory__/PDAUG_AddClassLabel.py' -I '$input1' -C '$ClassLabel' -O '$OutFile1' -t '$ClassLabelTitle' |
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16 ]]></command> |
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17 |
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18 <inputs> |
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19 <param name="input1" type="data" label="Input file" format="tabular" multiple="true" argument= "--InFile" help="Input tabular data file."/> |
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20 <param name="ClassLabel" type='text' label="Class Label" value="0" argument="--ClassLabel" help="Class Label ex. 0 or 1"/> |
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21 <param name="ClassLabelTitle" label="Class Label Title" type='text' value="Class_label" argument="--ClassLabelTitle" help="Name of the Column."/> |
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22 </inputs> |
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23 |
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24 <outputs> |
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25 <data name='OutFile1' format='tabular' label="${tool.name} on $on_string - (tabular)" /> |
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26 </outputs> |
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27 |
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28 <tests> |
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29 <test> |
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30 <param name="input1" value="new.tsv"/> |
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31 <output name="OutFile1" file="out.tsv"/> |
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32 </test> |
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33 </tests> |
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34 |
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35 <help><![CDATA[ |
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36 .. class:: infomark |
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37 |
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38 **What it does** |
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39 |
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40 This tool adds class labels to a dataframe. |
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41 |
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42 ----- |
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43 |
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44 **Inputs** |
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45 * **--InFile** Takes input as Tabular data file. |
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46 * **--ClassLabel** Class label. |
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47 * **--ClassLLabelTitle** Column name of class label. |
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48 |
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49 ----- |
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50 |
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51 **Outputs** |
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52 * **--OutFile** Returns a tabular file with the class labels.]]></help> |
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53 |
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54 |
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55 <citations> |
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56 <citation type="bibtex"> |
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57 |
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58 @misc{PDAUGGITHUB, |
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59 author = {Joshi, Jayadev and Blankenberg, Daniel}, |
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60 year = {2020}, |
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61 title ={PDAUG - a Galaxy based toolset for peptide library analysis, visualization, and machine learning modeling}, |
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62 publisher = {GitHub}, |
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63 journal = {GitHub repository}, |
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64 url = |
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65 {https://github.com/jaidevjoshi83/pdaug.git}, |
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66 |
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67 }</citation> |
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68 </citations> |
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69 |
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70 </tool> |
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71 |