diff PDAUG_AddClassLabel/PDAUG_AddClassLabel.xml @ 0:2df11ea23f10 draft

"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/PDAUG_AddClassLabel/PDAUG_AddClassLabel.xml	Wed Oct 28 02:36:27 2020 +0000
@@ -0,0 +1,71 @@
+<tool id="pdaug_addclasslabel" name="PDAUG Add Class Label" version="0.1.0">
+  <description> Add class label to the training data set</description>
+
+  <requirements>
+    <requirement type="package" version="2.7.18">python</requirement>
+    <requirement type="package" version="0.24.2">pandas</requirement>
+  </requirements>
+
+
+  <stdio>
+    <exit_code range="1" level="fatal" />
+  </stdio>
+
+    <command detect_errors="exit_code"><![CDATA[
+        python '$__tool_directory__/PDAUG_AddClassLabel.py' -I '$input1' -C '$ClassLabel' -O '$OutFile1' -t '$ClassLabelTitle'
+    ]]></command>
+
+  <inputs>
+    <param name="input1" type="data" label="Input file" format="tabular"  multiple="true" argument= "--InFile" help="Input tabular data file."/>
+    <param name="ClassLabel" type='text' label="Class Label" value="0" argument="--ClassLabel" help="Class Label ex. 0 or 1"/>
+    <param name="ClassLabelTitle" label="Class Label Title"  type='text' value="Class_label" argument="--ClassLabelTitle" help="Name of the Column."/>
+  </inputs>
+
+  <outputs>
+    <data name='OutFile1' format='tabular' label="${tool.name} on $on_string - (tabular)" />
+  </outputs>
+
+  <tests>
+    <test>
+      <param name="input1" value="new.tsv"/>
+      <output name="OutFile1" file="out.tsv"/>
+    </test>
+  </tests>
+
+    <help><![CDATA[
+.. class:: infomark
+
+**What it does**
+
+This tool adds class labels to a dataframe.
+
+-----
+
+**Inputs**
+    * **--InFile** Takes input as Tabular data file.
+    * **--ClassLabel** Class label. 
+    * **--ClassLLabelTitle** Column name of class label. 
+
+-----
+
+**Outputs**
+    * **--OutFile** Returns a tabular file with the class labels.]]></help>
+
+
+<citations>
+  <citation type="bibtex">
+
+  @misc{PDAUGGITHUB, 
+    author = {Joshi, Jayadev  and Blankenberg, Daniel}, 
+    year = {2020}, 
+    title ={PDAUG - a Galaxy based toolset for peptide library analysis, visualization, and machine learning modeling}, 
+    publisher = {GitHub}, 
+    journal = {GitHub repository}, 
+    url =
+    {https://github.com/jaidevjoshi83/pdaug.git}, 
+
+}</citation>
+</citations>
+
+</tool>
+