Mercurial > repos > jay > pdaug_merge_dataframes
annotate PDAUG_Merge_Dataframes/PDAUG_Merge_Dataframes.xml @ 6:757ed293de85 draft
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit e8c8198105af7eab636fb2405e5ff335539ca14b"
author | jay |
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date | Sun, 31 Jan 2021 02:04:57 +0000 (2021-01-31) |
parents | b5a9f541c6f8 |
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1 <tool id="pdaug_merge_dataframes" name="PDAUG Merge Dataframes" version="0.1.0" python_template_version="3.5"> |
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2 |
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3 <description>Merge two data frames</description> |
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4 |
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5 <requirements> |
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6 <requirement version="0.24.2" type="package" >pandas </requirement> |
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7 </requirements> |
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8 |
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9 |
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10 <command detect_errors="exit_code"><![CDATA[ |
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11 python $__tool_directory__/PDAUG_Merge_Dataframes.py -I '$input1' -O '$output1' |
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12 |
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13 #if $selmethod.method == 'advance' |
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14 -L "True" |
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15 -C '$selmethod.classlabel' |
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16 #end if |
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17 |
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18 ]]></command> |
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19 <inputs> |
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20 |
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21 <param type="data" name="input1" label="Input files" format="tabular" multiple="true" help="Input tabular data files"/> |
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22 |
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23 <conditional name='selmethod' > |
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24 <param name="method" type="select" label="Option to merg data" argument="--Method" help="Split file if class labels are present" > |
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25 <option value="advance"> Merge data and add class labels</option> |
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26 <option value="default" selected="true" > Merge data without adding class labels</option> |
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27 </param> |
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28 |
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29 <when value="advance"> |
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30 <param name="classlabel" type="text" label="Name the column for class label" argument= "--SlcClassLabel" help="Select Class Label"/> |
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31 </when> |
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32 |
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33 <when value="default"> |
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34 </when> |
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35 </conditional> |
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36 </inputs> |
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37 |
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38 <outputs> |
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39 <data name='output1' label="${tool.name} on $on_string - (tabular)" format='tabular' /> |
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40 </outputs> |
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41 |
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42 <tests> |
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43 <test> |
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44 <param name="method" value="advance"/> |
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45 <param name="classlabel" value="class_label" /> |
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46 <param name="input1" value="1.tsv,2.tsv"/> |
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47 <output name="output1" file="out1.tsv" /> |
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48 </test> |
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49 <test> |
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50 <param name="method" value="default" /> |
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51 <param name="input1" value="1.tsv,2.tsv"/> |
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52 <output name="output1" file="out.tsv" /> |
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53 </test> |
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54 </tests> |
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55 <help><![CDATA[ |
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56 .. class:: infomark |
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57 |
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58 **What it does** |
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59 |
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60 This tool merges two data frames. |
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61 |
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62 ----- |
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63 |
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64 **Inputs** |
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65 * Tabular data file (example input1.tsv and input2.tsv). |
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66 * Option to merge data adds class label after merging the tabular data. |
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67 |
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68 ----- |
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69 |
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70 **Outputs** |
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71 * Returns merged tabular data file with or without class labels. |
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72 |
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73 |
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74 ]]></help> |
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75 <citations> |
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76 <citation type="bibtex"> |
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77 |
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78 @misc{PDAUGGITHUB, |
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79 author = {Joshi, Jayadev and Blankenberg, Daniel}, |
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80 year = {2020}, |
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81 title ={PDAUG - a Galaxy based toolset for peptide library analysis, visualization, and machine learning modeling}, |
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82 publisher = {GitHub}, |
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83 journal = {GitHub repository}, |
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84 url = |
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85 {https://github.com/jaidevjoshi83/pdaug.git}, |
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86 |
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87 }</citation> |
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88 </citations> |
5bb52d4bf172
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
parents:
diff
changeset
|
89 |
5bb52d4bf172
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
parents:
diff
changeset
|
90 </tool> |