Mercurial > repos > jay > pdaug_ml_models
comparison PDAUG_ML_Models/PDAUG_ML_Models.xml @ 1:5448f9425c6a draft
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit 3c91f421d26c8f42cf2671e47db735d2cf69dde8"
| author | jay |
|---|---|
| date | Tue, 29 Dec 2020 04:43:09 +0000 |
| parents | 0973f093d98f |
| children | 8697dc4a7f45 |
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| 0:0973f093d98f | 1:5448f9425c6a |
|---|---|
| 14 | 14 |
| 15 python '$__tool_directory__/PDAUG_ML_Models.py' '$SelMLAlgo.MLAlgo' | 15 python '$__tool_directory__/PDAUG_ML_Models.py' '$SelMLAlgo.MLAlgo' |
| 16 | 16 |
| 17 #if $SelMLAlgo.MLAlgo == 'SVMC' | 17 #if $SelMLAlgo.MLAlgo == 'SVMC' |
| 18 #if $SelMLAlgo.settings.advanced == "advanced" | 18 #if $SelMLAlgo.settings.advanced == "advanced" |
| 19 --cache_size $SelMLAlgo.settings.cache_size | 19 --cache_size '$SelMLAlgo.settings.cache_size' |
| 20 --C $SelMLAlgo.settings.C | 20 --C '$SelMLAlgo.settings.C' |
| 21 --kernel '$SelMLAlgo.settings.kernel' | 21 --kernel '$SelMLAlgo.settings.kernel' |
| 22 --degree '$SelMLAlgo.settings.degree' | 22 --degree '$SelMLAlgo.settings.degree' |
| 23 --gamma '$SelMLAlgo.settings.gamma' | 23 --gamma '$SelMLAlgo.settings.gamma' |
| 24 --coef0 '$SelMLAlgo.settings.coef0' | 24 --coef0 '$SelMLAlgo.settings.coef0' |
| 25 --probability '$SelMLAlgo.settings.probability' | 25 --probability '$SelMLAlgo.settings.probability' |
| 33 #end if | 33 #end if |
| 34 #end if | 34 #end if |
| 35 | 35 |
| 36 #if $SelMLAlgo.MLAlgo == 'SGDC' | 36 #if $SelMLAlgo.MLAlgo == 'SGDC' |
| 37 #if $SelMLAlgo.settings.advanced == "advanced" | 37 #if $SelMLAlgo.settings.advanced == "advanced" |
| 38 --loss $SelMLAlgo.settings.loss | 38 --loss '$SelMLAlgo.settings.loss' |
| 39 --penalty $SelMLAlgo.settings.penalty | 39 --penalty '$SelMLAlgo.settings.penalty' |
| 40 --alpha $SelMLAlgo.settings.alpha | 40 --alpha '$SelMLAlgo.settings.alpha' |
| 41 --l1_ratio $SelMLAlgo.settings.l1_ratio | 41 --l1_ratio '$SelMLAlgo.settings.l1_ratio' |
| 42 --fit_intercept $SelMLAlgo.settings.fit_intercept | 42 --fit_intercept '$SelMLAlgo.settings.fit_intercept' |
| 43 --max_iter $SelMLAlgo.settings.max_iter | 43 --max_iter '$SelMLAlgo.settings.max_iter' |
| 44 --tol $SelMLAlgo.settings.tol | 44 --tol '$SelMLAlgo.settings.tol' |
| 45 --shuffle $SelMLAlgo.settings.shuffle | 45 --shuffle '$SelMLAlgo.settings.shuffle' |
| 46 --verbose $SelMLAlgo.settings.verbose | 46 --verbose '$SelMLAlgo.settings.verbose' |
| 47 --epsilon $SelMLAlgo.settings.epsilon | 47 --epsilon '$SelMLAlgo.settings.epsilon' |
| 48 --n_jobs $SelMLAlgo.settings.n_jobs | 48 --n_jobs '$SelMLAlgo.settings.n_jobs' |
| 49 --random_state $SelMLAlgo.settings.random_state | 49 --random_state '$SelMLAlgo.settings.random_state' |
| 50 --learning_rate $SelMLAlgo.settings.learning_rate | 50 --learning_rate '$SelMLAlgo.settings.learning_rate' |
| 51 --eta0 $SelMLAlgo.settings.eta0 | 51 --eta0 '$SelMLAlgo.settings.eta0' |
| 52 --power_t $SelMLAlgo.settings.power_t | 52 --power_t '$SelMLAlgo.settings.power_t' |
| 53 --early_stopping $SelMLAlgo.settings.early_stopping | 53 --early_stopping '$SelMLAlgo.settings.early_stopping' |
| 54 --validation_fraction $SelMLAlgo.settings.validation_fraction | 54 --validation_fraction '$SelMLAlgo.settings.validation_fraction' |
| 55 --n_iter_no_change $SelMLAlgo.settings.n_iter_no_change | 55 --n_iter_no_change '$SelMLAlgo.settings.n_iter_no_change' |
| 56 --warm_start $SelMLAlgo.settings.warm_start | 56 --warm_start '$SelMLAlgo.settings.warm_start' |
| 57 --average $SelMLAlgo.settings.average | 57 --average '$SelMLAlgo.settings.average' |
| 58 | 58 |
| 59 #end if | 59 #end if |
| 60 #end if | 60 #end if |
| 61 | 61 |
| 62 #if $SelMLAlgo.MLAlgo == 'DTC' | 62 #if $SelMLAlgo.MLAlgo == 'DTC' |
| 63 #if $SelMLAlgo.settings.advanced == "advanced" | 63 #if $SelMLAlgo.settings.advanced == "advanced" |
| 64 --criterion $SelMLAlgo.settings.criterion | 64 --criterion '$SelMLAlgo.settings.criterion' |
| 65 --splitter $SelMLAlgo.settings.splitter | 65 --splitter '$SelMLAlgo.settings.splitter' |
| 66 --max_depth $SelMLAlgo.settings.max_depth | 66 --max_depth '$SelMLAlgo.settings.max_depth' |
| 67 --min_samples_split $SelMLAlgo.settings.min_samples_split | 67 --min_samples_split '$SelMLAlgo.settings.min_samples_split' |
| 68 --min_samples_leaf $SelMLAlgo.settings.min_samples_leaf | 68 --min_samples_leaf '$SelMLAlgo.settings.min_samples_leaf' |
| 69 --min_weight_fraction_leaf $SelMLAlgo.settings.min_weight_fraction_leaf | 69 --min_weight_fraction_leaf '$SelMLAlgo.settings.min_weight_fraction_leaf' |
| 70 --max_features $SelMLAlgo.settings.max_features | 70 --max_features '$SelMLAlgo.settings.max_features' |
| 71 --random_state $SelMLAlgo.settings.random_state | 71 --random_state '$SelMLAlgo.settings.random_state' |
| 72 --max_leaf_nodes $SelMLAlgo.settings.max_leaf_nodes | 72 --max_leaf_nodes '$SelMLAlgo.settings.max_leaf_nodes' |
| 73 --min_impurity_decrease $SelMLAlgo.settings.min_impurity_decrease | 73 --min_impurity_decrease '$SelMLAlgo.settings.min_impurity_decrease' |
| 74 --min_impurity_split $SelMLAlgo.settings.min_impurity_split | 74 --min_impurity_split '$SelMLAlgo.settings.min_impurity_split' |
| 75 --presort $SelMLAlgo.settings.presort | 75 --presort '$SelMLAlgo.settings.presort' |
| 76 --ccpalpha $SelMLAlgo.settings.ccpalpha | 76 --ccpalpha '$SelMLAlgo.settings.ccpalpha' |
| 77 #end if | 77 #end if |
| 78 #end if | 78 #end if |
| 79 | 79 |
| 80 | 80 |
| 81 #if $SelMLAlgo.MLAlgo == 'GBC' | 81 #if $SelMLAlgo.MLAlgo == 'GBC' |
| 82 #if $SelMLAlgo.settings.advanced == "advanced" | 82 #if $SelMLAlgo.settings.advanced == "advanced" |
| 83 --loss $SelMLAlgo.settings.loss | 83 --loss '$SelMLAlgo.settings.loss' |
| 84 --learning_rate $SelMLAlgo.settings.learning_rate | 84 --learning_rate '$SelMLAlgo.settings.learning_rate' |
| 85 --n_estimators $SelMLAlgo.settings.n_estimators | 85 --n_estimators '$SelMLAlgo.settings.n_estimators' |
| 86 --subsample $SelMLAlgo.settings.subsample | 86 --subsample '$SelMLAlgo.settings.subsample' |
| 87 --criterion $SelMLAlgo.settings.criterion | 87 --criterion '$SelMLAlgo.settings.criterion' |
| 88 --min_samples_split $SelMLAlgo.settings.min_samples_split | 88 --min_samples_split '$SelMLAlgo.settings.min_samples_split |
| 89 --min_samples_leaf $SelMLAlgo.settings.min_samples_leaf | 89 --min_samples_leaf '$SelMLAlgo.settings.min_samples_leaf'' |
| 90 --min_weight_fraction_leaf $SelMLAlgo.settings.min_weight_fraction_leaf | 90 --min_weight_fraction_leaf '$SelMLAlgo.settings.min_weight_fraction_leaf' |
| 91 --max_depth $SelMLAlgo.settings.max_depth | 91 --max_depth '$SelMLAlgo.settings.max_depth' |
| 92 --min_impurity_decrease $SelMLAlgo.settings.min_impurity_decrease | 92 --min_impurity_decrease '$SelMLAlgo.settings.min_impurity_decrease' |
| 93 --min_impurity_split $SelMLAlgo.settings.min_impurity_split | 93 --min_impurity_split '$SelMLAlgo.settings.min_impurity_split' |
| 94 --init $SelMLAlgo.settings.init | 94 --init '$SelMLAlgo.settings.init' |
| 95 --random_state $SelMLAlgo.settings.random_state | 95 --random_state '$SelMLAlgo.settings.random_state' |
| 96 --max_features $SelMLAlgo.settings.max_features | 96 --max_features '$SelMLAlgo.settings.max_features' |
| 97 --verbose $SelMLAlgo.settings.verbose | 97 --verbose '$SelMLAlgo.settings.verbose' |
| 98 --max_leaf_nodes $SelMLAlgo.settings.max_leaf_nodes | 98 --max_leaf_nodes '$SelMLAlgo.settings.max_leaf_nodes' |
| 99 --warm_start $SelMLAlgo.settings.warm_start | 99 --warm_start '$SelMLAlgo.settings.warm_start' |
| 100 --presort $SelMLAlgo.settings.presort | 100 --presort '$SelMLAlgo.settings.presort' |
| 101 --validation_fraction $SelMLAlgo.settings.validation_fraction | 101 --validation_fraction '$SelMLAlgo.settings.validation_fraction' |
| 102 --n_iter_no_change $SelMLAlgo.settings.n_iter_no_change | 102 --n_iter_no_change '$SelMLAlgo.settings.n_iter_no_change' |
| 103 --tol $SelMLAlgo.settings.tol | 103 --tol '$SelMLAlgo.settings.tol' |
| 104 --ccpalpha $SelMLAlgo.settings.ccpalpha | 104 --ccpalpha '$SelMLAlgo.settings.ccpalpha' |
| 105 #end if | 105 #end if |
| 106 #end if | 106 #end if |
| 107 | 107 |
| 108 #if $SelMLAlgo.MLAlgo == 'RFC' | 108 #if $SelMLAlgo.MLAlgo == 'RFC' |
| 109 #if $SelMLAlgo.settings.advanced == "advanced" | 109 #if $SelMLAlgo.settings.advanced == "advanced" |
| 110 --n_estimators $SelMLAlgo.settings.n_estimators | 110 --n_estimators '$SelMLAlgo.settings.n_estimators' |
| 111 --criterion $SelMLAlgo.settings.criterion | 111 --criterion '$SelMLAlgo.settings.criterion' |
| 112 --max_depth $SelMLAlgo.settings.max_depth | 112 --max_depth '$SelMLAlgo.settings.max_depth' |
| 113 --min_samples_split $SelMLAlgo.settings.min_samples_split | 113 --min_samples_split '$SelMLAlgo.settings.min_samples_split' |
| 114 --min_samples_leaf $SelMLAlgo.settings.min_samples_leaf | 114 --min_samples_leaf '$SelMLAlgo.settings.min_samples_leaf' |
| 115 --min_weight_fraction_leaf $SelMLAlgo.settings.min_weight_fraction_leaf | 115 --min_weight_fraction_leaf '$SelMLAlgo.settings.min_weight_fraction_leaf' |
| 116 --max_features $SelMLAlgo.settings.max_features | 116 --max_features '$SelMLAlgo.settings.max_features' |
| 117 --max_leaf_nodes $SelMLAlgo.settings.max_leaf_nodes | 117 --max_leaf_nodes '$SelMLAlgo.settings.max_leaf_nodes' |
| 118 --min_impurity_decrease $SelMLAlgo.settings.min_impurity_decrease | 118 --min_impurity_decrease '$SelMLAlgo.settings.min_impurity_decrease' |
| 119 --min_impurity_split $SelMLAlgo.settings.min_impurity_split | 119 --min_impurity_split '$SelMLAlgo.settings.min_impurity_split' |
| 120 --bootstrap $SelMLAlgo.settings.bootstrap | 120 --bootstrap '$SelMLAlgo.settings.bootstrap' |
| 121 --oob_score $SelMLAlgo.settings.oob_score | 121 --oob_score '$SelMLAlgo.settings.oob_score' |
| 122 --n_jobs $SelMLAlgo.settings.n_jobs | 122 --n_jobs '$SelMLAlgo.settings.n_jobs' |
| 123 --random_state $SelMLAlgo.settings.random_state | 123 --random_state '$SelMLAlgo.settings.random_state' |
| 124 --verbose $SelMLAlgo.settings.verbose | 124 --verbose '$SelMLAlgo.settings.verbose' |
| 125 --warm_start $SelMLAlgo.settings.warm_start | 125 --warm_start '$SelMLAlgo.settings.warm_start' |
| 126 --ccp_alpha $SelMLAlgo.settings.ccp_alpha | 126 --ccp_alpha '$SelMLAlgo.settings.ccp_alpha' |
| 127 --max_samples $SelMLAlgo.settings.max_samples | 127 --max_samples '$SelMLAlgo.settings.max_samples' |
| 128 #end if | 128 #end if |
| 129 #end if | 129 #end if |
| 130 | 130 |
| 131 | 131 |
| 132 #if $SelMLAlgo.MLAlgo == 'LRC' | 132 #if $SelMLAlgo.MLAlgo == 'LRC' |
| 133 #if $SelMLAlgo.settings.advanced == "advanced" | 133 #if $SelMLAlgo.settings.advanced == "advanced" |
| 134 --penalty $SelMLAlgo.settings.penalty | 134 --penalty '$SelMLAlgo.settings.penalty' |
| 135 --dual $SelMLAlgo.settings.dual | 135 --dual '$SelMLAlgo.settings.dual' |
| 136 --tol $SelMLAlgo.settings.tol | 136 --tol '$SelMLAlgo.settings.tol' |
| 137 --C $SelMLAlgo.settings.C | 137 --C '$SelMLAlgo.settings.C' |
| 138 --fit_intercept $SelMLAlgo.settings.fit_intercept | 138 --fit_intercept '$SelMLAlgo.settings.fit_intercept' |
| 139 --intercept_scaling $SelMLAlgo.settings.intercept_scaling | 139 --intercept_scaling '$SelMLAlgo.settings.intercept_scaling' |
| 140 --random_state $SelMLAlgo.settings.random_state | 140 --random_state '$SelMLAlgo.settings.random_state' |
| 141 --solver $SelMLAlgo.settings.solver | 141 --solver '$SelMLAlgo.settings.solver' |
| 142 --max_iter $SelMLAlgo.settings.max_iter | 142 --max_iter '$SelMLAlgo.settings.max_iter' |
| 143 --multi_class $SelMLAlgo.settings.multi_class | 143 --multi_class '$SelMLAlgo.settings.multi_class' |
| 144 --verbose $SelMLAlgo.settings.verbose | 144 --verbose '$SelMLAlgo.settings.verbose' |
| 145 --warm_start $SelMLAlgo.settings.warm_start | 145 --warm_start '$SelMLAlgo.settings.warm_start' |
| 146 --n_jobs $SelMLAlgo.settings.n_jobs | 146 --n_jobs '$SelMLAlgo.settings.n_jobs' |
| 147 --l1_ratio $SelMLAlgo.settings.l1_ratio | 147 --l1_ratio '$SelMLAlgo.settings.l1_ratio' |
| 148 #end if | 148 #end if |
| 149 #end if | 149 #end if |
| 150 | 150 |
| 151 #if $SelMLAlgo.MLAlgo == 'KNC' | 151 #if $SelMLAlgo.MLAlgo == 'KNC' |
| 152 #if $SelMLAlgo.settings.advanced == "advanced" | 152 #if $SelMLAlgo.settings.advanced == "advanced" |
| 153 --n_neighbors $SelMLAlgo.settings.n_neighbors | 153 --n_neighbors '$SelMLAlgo.settings.n_neighbors' |
| 154 --weights $SelMLAlgo.settings.weights | 154 --weights '$SelMLAlgo.settings.weights' |
| 155 --algorithm $SelMLAlgo.settings.algorithm | 155 --algorithm '$SelMLAlgo.settings.algorithm' |
| 156 --leaf_size $SelMLAlgo.settings.leaf_size | 156 --leaf_size '$SelMLAlgo.settings.leaf_size' |
| 157 --p $SelMLAlgo.settings.p | 157 --p '$SelMLAlgo.settings.p' |
| 158 --metric $SelMLAlgo.settings.metric | 158 --metric '$SelMLAlgo.settings.metric' |
| 159 --n_jobs $SelMLAlgo.settings.n_jobs | 159 --n_jobs '$SelMLAlgo.settings.n_jobs' |
| 160 #end if | 160 #end if |
| 161 #end if | 161 #end if |
| 162 | 162 |
| 163 #if $SelMLAlgo.MLAlgo == 'GNBC' | 163 #if $SelMLAlgo.MLAlgo == 'GNBC' |
| 164 #if $SelMLAlgo.settings.advanced == "advanced" | 164 #if $SelMLAlgo.settings.advanced == "advanced" |
| 165 --var_smoothing $SelMLAlgo.settings.var_smoothing | 165 --var_smoothing '$SelMLAlgo.settings.var_smoothing' |
| 166 #end if | 166 #end if |
| 167 #end if | 167 #end if |
| 168 | 168 |
| 169 #if $SelMLAlgo.MLAlgo == 'MLP' | 169 #if $SelMLAlgo.MLAlgo == 'MLP' |
| 170 #if $SelMLAlgo.settings.advanced == "advanced" | 170 #if $SelMLAlgo.settings.advanced == "advanced" |
| 171 --hidden_layer_sizes $SelMLAlgo.settings.hidden_layer_sizes | 171 --hidden_layer_sizes '$SelMLAlgo.settings.hidden_layer_sizes' |
| 172 --activation $SelMLAlgo.settings.activation | 172 --activation '$SelMLAlgo.settings.activation' |
| 173 --solver $SelMLAlgo.settings.solver | 173 --solver '$SelMLAlgo.settings.solver' |
| 174 --alpha $SelMLAlgo.settings.alpha | 174 --alpha '$SelMLAlgo.settings.alpha' |
| 175 --batch_size $SelMLAlgo.settings.batch_size | 175 --batch_size '$SelMLAlgo.settings.batch_size' |
| 176 --learning_rate $SelMLAlgo.settings.learning_rate | 176 --learning_rate '$SelMLAlgo.settings.learning_rate' |
| 177 --learning_rate_init $SelMLAlgo.settings.learning_rate_init | 177 --learning_rate_init '$SelMLAlgo.settings.learning_rate_init' |
| 178 --power_t $SelMLAlgo.settings.power_t | 178 --power_t '$SelMLAlgo.settings.power_t' |
| 179 --max_iter $SelMLAlgo.settings.max_iter | 179 --max_iter '$SelMLAlgo.settings.max_iter' |
| 180 --shuffle $SelMLAlgo.settings.shuffle | 180 --shuffle '$SelMLAlgo.settings.shuffle' |
| 181 --random_state $SelMLAlgo.settings.random_state | 181 --random_state '$SelMLAlgo.settings.random_state' |
| 182 --tol $SelMLAlgo.settings.tol | 182 --tol '$SelMLAlgo.settings.tol' |
| 183 --verbose $SelMLAlgo.settings.verbose | 183 --verbose '$SelMLAlgo.settings.verbose' |
| 184 --warm_start $SelMLAlgo.settings.warm_start | 184 --warm_start '$SelMLAlgo.settings.warm_start' |
| 185 --momentum $SelMLAlgo.settings.momentum | 185 --momentum '$SelMLAlgo.settings.momentum' |
| 186 --nesterovs_momentum $SelMLAlgo.settings.nesterovs_momentum | 186 --nesterovs_momentum '$SelMLAlgo.settings.nesterovs_momentum' |
| 187 --early_stopping $SelMLAlgo.settings.early_stopping | 187 --early_stopping '$SelMLAlgo.settings.early_stopping' |
| 188 --validation_fraction $SelMLAlgo.settings.validation_fraction | 188 --validation_fraction '$SelMLAlgo.settings.validation_fraction' |
| 189 --beta_1 $SelMLAlgo.settings.beta_1 | 189 --beta_1 '$SelMLAlgo.settings.beta_1' |
| 190 --beta_2 $SelMLAlgo.settings.beta_2 | 190 --beta_2 '$SelMLAlgo.settings.beta_2' |
| 191 --epsilon $SelMLAlgo.settings.epsilon | 191 --epsilon '$SelMLAlgo.settings.epsilon' |
| 192 --n_iter_no_change $SelMLAlgo.settings.n_iter_no_change | 192 --n_iter_no_change '$SelMLAlgo.settings.n_iter_no_change' |
| 193 --max_fun $SelMLAlgo.settings.max_fun | 193 --max_fun '$SelMLAlgo.settings.max_fun' |
| 194 --TrainFile $SelMLAlgo.settings.TrainFile | 194 --TrainFile '$SelMLAlgo.settings.TrainFile' |
| 195 --TestMethod $SelMLAlgo.settings.TestMethod | 195 --TestMethod '$SelMLAlgo.settings.TestMethod' |
| 196 --SelectedSclaer $SelMLAlgo.settings.SelectedSclaer | 196 --SelectedSclaer '$SelMLAlgo.settings.SelectedSclaer' |
| 197 --NFolds $SelMLAlgo.settings.NFolds | 197 --NFolds '$SelMLAlgo.settings.NFolds' |
| 198 --Testspt $SelMLAlgo.settings.Testspt | 198 --Testspt '$SelMLAlgo.settings.Testspt' |
| 199 --TestFile $SelMLAlgo.settings.TestFile | 199 --TestFile '$SelMLAlgo.settings.TestFile' |
| 200 --OutFile $SelMLAlgo.settings.OutFile | 200 --OutFile '$SelMLAlgo.settings.OutFile' |
| 201 --htmlOutDir $SelMLAlgo.settings.htmlOutDir | 201 --htmlOutDir '$SelMLAlgo.settings.htmlOutDir' |
| 202 --htmlFname $SelMLAlgo.settings.htmlFname | 202 --htmlFname '$SelMLAlgo.settings.htmlFname' |
| 203 --Workdirpath $SelMLAlgo.settings.Workdirpath | 203 --Workdirpath '$SelMLAlgo.settings.Workdirpath' |
| 204 #end if | 204 #end if |
| 205 #end if | 205 #end if |
| 206 | 206 |
| 207 --TrainFile '$input1' --TestMethod '$TestMethods.SelTestMethods' --SelectedSclaer '$scalling' | 207 --TrainFile '$input1' --TestMethod '$TestMethods.SelTestMethods' --SelectedSclaer '$scalling' |
| 208 --htmlOutDir '$output2.extra_files_path' | 208 --htmlOutDir '$output2.extra_files_path' |