Mercurial > repos > jay > pdaug_peptide_data_access

view PDAUG_Merge_Dataframes/PDAUG_Merge_Dataframes.py @ 1:f85327600c11 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit 3c91f421d26c8f42cf2671e47db735d2cf69dde8"
author jay
date Tue, 29 Dec 2020 04:11:02 +0000
parents 6c12ca9f5d88
children 3eb014f169cf
line wrap: on
line source

import glob
import pandas as pd 
import sys

files = sys.argv[1]
out_file = sys.argv[2]


data_frame = pd.read_csv(files.split(',')[0],sep='\t')


for file in files.split(',')[1:]: 

    df1 = pd.read_csv(file,sep='\t')
    data_frame =  pd.concat([data_frame,df1])

final_DF = data_frame.fillna(0)

final_DF.to_csv(out_file,sep="\t", index=False)