Mercurial > repos > jay > pdaug_peptide_ngrams

comparison PDAUG_TSVtoFASTA/PDAUG_TSVtoFASTA.py @ 3:b2a7b957cd52 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit edb37634e419f75dd66292e712de51278746d883"
author jay
date Wed, 30 Dec 2020 03:06:50 +0000
parents bc6aef6ec2d4
children cb2b359a6600
comparison
equal deleted inserted replaced
2:bc6aef6ec2d4 3:b2a7b957cd52
25 25
26 for line in lines: 26 for line in lines:
27 27
28 if l[1] in line.split('\t')[1].strip('\n').strip('\r'): 28 if l[1] in line.split('\t')[1].strip('\n').strip('\r'):
29 n= n+1 29 n= n+1
30 of1.write('>peptide_'+str(n)+'_'+str(l[0])+'\n') 30 of1.write('>peptide_'+str(n)+'_'+str(l[1])+'\n')
31 of1.write(line.split('\t')[0]+'\n') 31 of1.write(line.split('\t')[0]+'\n')
32 32
33 if l[0] in line.split('\t')[1].strip('\n').strip('\r'): 33 if l[0] in line.split('\t')[1].strip('\n').strip('\r'):
34 m= m+1 34 m= m+1
35 of2.write('>peptide_'+str(m)+'_'+str(l[1])+'\n') 35 of2.write('>peptide_'+str(m)+'_'+str(l[0])+'\n')
36 of2.write(line.split('\t')[0]+'\n') 36 of2.write(line.split('\t')[0]+'\n')
37 37
38 elif Method == 'NoClassLabel': 38 elif Method == 'NoClassLabel':
39 39
40 f = open(InFile) 40 f = open(InFile)