Mercurial > repos > jay > pdaug_peptide_ngrams
comparison PDAUG_TSVtoFASTA/PDAUG_TSVtoFASTA.py @ 2:bc6aef6ec2d4 draft
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit 8b18552f6d2b2261efebe1075ff4c18a295b94dd"
| author | jay |
|---|---|
| date | Tue, 29 Dec 2020 18:38:48 +0000 |
| parents | 9b5e990a0ebb |
| children | b2a7b957cd52 |
comparison
equal
deleted
inserted
replaced
| 1:9b5e990a0ebb | 2:bc6aef6ec2d4 |
|---|---|
| 19 | 19 |
| 20 for line in lines[1:]: | 20 for line in lines[1:]: |
| 21 l.append(line.split('\t')[1].strip('\n').strip('\r')) | 21 l.append(line.split('\t')[1].strip('\n').strip('\r')) |
| 22 l = list(set(l)) | 22 l = list(set(l)) |
| 23 | 23 |
| 24 print(l) | |
| 25 | |
| 24 for line in lines: | 26 for line in lines: |
| 25 | 27 |
| 26 if l[0] in line.split('\t')[1].strip('\n').strip('\r'): | 28 if l[1] in line.split('\t')[1].strip('\n').strip('\r'): |
| 27 n= n+1 | 29 n= n+1 |
| 28 of1.write('>peptide_'+str(n)+'_'+str(l[0])+'\n') | 30 of1.write('>peptide_'+str(n)+'_'+str(l[0])+'\n') |
| 29 of1.write(line.split('\t')[0]+'\n') | 31 of1.write(line.split('\t')[0]+'\n') |
| 30 | 32 |
| 31 if l[1] in line.split('\t')[1].strip('\n').strip('\r'): | 33 if l[0] in line.split('\t')[1].strip('\n').strip('\r'): |
| 32 m= m+1 | 34 m= m+1 |
| 33 of2.write('>peptide_'+str(m)+'_'+str(l[1])+'\n') | 35 of2.write('>peptide_'+str(m)+'_'+str(l[1])+'\n') |
| 34 of2.write(line.split('\t')[0]+'\n') | 36 of2.write(line.split('\t')[0]+'\n') |
| 35 | 37 |
| 36 elif Method == 'NoClassLabel': | 38 elif Method == 'NoClassLabel': |