Mercurial > repos > jay > pdaug_sequence_property_based_descriptors
annotate PDAUG_AddClassLabel/PDAUG_AddClassLabel.py @ 10:187c6f2d3b55 draft default tip
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit d396d7ff89705cc0dd626ed32c45a9f4029b1b05"
author | jay |
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date | Wed, 12 Jan 2022 20:20:40 +0000 |
parents | 6b6aec52638d |
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6b6aec52638d
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
parents:
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1 import pandas as pd |
6b6aec52638d
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
parents:
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2 import argparse |
6b6aec52638d
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
parents:
diff
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3 |
6b6aec52638d
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
parents:
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changeset
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4 parser = argparse.ArgumentParser() |
6b6aec52638d
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
parents:
diff
changeset
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5 |
6b6aec52638d
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
parents:
diff
changeset
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6 parser.add_argument("-I", "--InFile", required=True, default=None, help="Input data file") |
6b6aec52638d
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
parents:
diff
changeset
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7 parser.add_argument("-C", "--ClassLabel", required=False, default=0, help="Class Label 0 or 1") |
6b6aec52638d
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
parents:
diff
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8 parser.add_argument("-t", "--ClassLabelTitle", required=False, default='Class_label', help="Title to use for class label column (Class_label)") |
6b6aec52638d
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
parents:
diff
changeset
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9 parser.add_argument("-O", "--OutFile", required=False, default='OutFile.tsv', help="Output file name") |
6b6aec52638d
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
parents:
diff
changeset
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10 |
6b6aec52638d
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
parents:
diff
changeset
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11 args = parser.parse_args() |
6b6aec52638d
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
parents:
diff
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12 |
6b6aec52638d
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
parents:
diff
changeset
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13 df1 = pd.read_csv(args.InFile, sep="\t") |
6b6aec52638d
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
parents:
diff
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14 df2 = pd.DataFrame([args.ClassLabel]*df1.shape[0], columns=[args.ClassLabelTitle]) |
6b6aec52638d
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
parents:
diff
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15 |
6b6aec52638d
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
parents:
diff
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16 df = pd.concat([df1, df2], axis=1) |
6b6aec52638d
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
parents:
diff
changeset
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17 df.to_csv(args.OutFile, sep="\t", index=False) |