Mercurial > repos > jay > pdaug_sequence_property_based_descriptors
comparison PDAUG_Peptide_Core_Functions/PDAUG_Peptide_Core_Functions.py @ 8:88fe070257d6 draft
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit 32b9c48c81639a81be24bb3e2f48dc0a81c0deca"
author | jay |
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date | Sun, 09 Jan 2022 04:48:33 +0000 |
parents | 6b6aec52638d |
children |
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7:9bcde9583f9c | 8:88fe070257d6 |
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14 mutateAA.add_argument("-F","--FastOut", required=False, default='Out.fasta', help="Mutated output fasta") | 14 mutateAA.add_argument("-F","--FastOut", required=False, default='Out.fasta', help="Mutated output fasta") |
15 | 15 |
16 filterduplicates = subparsers.add_parser('filterduplicates') | 16 filterduplicates = subparsers.add_parser('filterduplicates') |
17 filterduplicates.add_argument("-I","--InFile", required=True, default=None, help="Input file") | 17 filterduplicates.add_argument("-I","--InFile", required=True, default=None, help="Input file") |
18 filterduplicates.add_argument("-F","--FastOut", required=False, default='Out.fasta', help="Output file") | 18 filterduplicates.add_argument("-F","--FastOut", required=False, default='Out.fasta', help="Output file") |
19 | 19 filterduplicates.add_argument("-A","--FilterAA", required=True, default=None, help="Filter amino acide") |
20 | 20 |
21 keepnaturalaa = subparsers.add_parser('keepnaturalaa') | 21 keepnaturalaa = subparsers.add_parser('keepnaturalaa') |
22 keepnaturalaa.add_argument("-I","--InFile", required=True, default=None, help="Inputt file") | 22 keepnaturalaa.add_argument("-I","--InFile", required=True, default=None, help="Inputt file") |
23 keepnaturalaa.add_argument("-F","--FastOut", required=False, default='Out.fasta', help="Output file") | 23 keepnaturalaa.add_argument("-F","--FastOut", required=False, default='Out.fasta', help="Output file") |
24 | 24 keepnaturalaa.add_argument("-A","--FilterAA", required=True, default=None, help="Filter amino acide") |
25 | 25 |
26 filteraa = subparsers.add_parser('filteraa') | 26 filteraa = subparsers.add_parser('filteraa') |
27 filteraa.add_argument("-I","--InFile", required=True, default=None, help="Input file") | 27 filteraa.add_argument("-I","--InFile", required=True, default=None, help="Input file") |
28 filteraa.add_argument("-F","--FastOut", required=False, default='Out.fasta', help="Output file") | 28 filteraa.add_argument("-F","--FastOut", required=False, default='Out.fasta', help="Output file") |
29 filteraa.add_argument("-A","--FilterAA", required=True, default=None, help="Filter amino acide") | 29 filteraa.add_argument("-A","--FilterAA", required=True, default=None, help="Filter amino acide") |