comparison PDAUG_TSVtoFASTA/PDAUG_TSVtoFASTA.py @ 5:f93187136dfb draft

"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit edb37634e419f75dd66292e712de51278746d883"

4:87b77f2ddb0c

        for line in lines:

            if l[1] in line.split('\t')[1].strip('\n').strip('\r'):
                n= n+1
                of1.write('>peptide_'+str(n)+'_'+str(l[0])+'\n')
                of1.write(line.split('\t')[0]+'\n')

            if l[0] in line.split('\t')[1].strip('\n').strip('\r'):
                m= m+1
                of2.write('>peptide_'+str(m)+'_'+str(l[1])+'\n')
                of2.write(line.split('\t')[0]+'\n')

    elif Method == 'NoClassLabel':

        f = open(InFile)

5:f93187136dfb

        for line in lines:

            if l[1] in line.split('\t')[1].strip('\n').strip('\r'):
                n= n+1
                of1.write('>peptide_'+str(n)+'_'+str(l[1])+'\n')
                of1.write(line.split('\t')[0]+'\n')

            if l[0] in line.split('\t')[1].strip('\n').strip('\r'):
                m= m+1
                of2.write('>peptide_'+str(m)+'_'+str(l[0])+'\n')
                of2.write(line.split('\t')[0]+'\n')

    elif Method == 'NoClassLabel':

        f = open(InFile)