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0
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="breakdancer" version="1.4.4(commit e2ceb53)">
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4 <install version="1.0">
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5 <actions>
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1
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6 <action type="shell_command">ls</action>
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2
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7 <action type="shell_command">pwd</action>
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8 <action type="shell_command">git clone --recursive https://github.com/genome/breakdancer.git .</action>
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1
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9 <!-- <action type="shell_command">cd breakdancer</action> -->
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10 <action type="shell_command">ls</action>
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4
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11 <action type="shell_command">pwd</action>
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12 <action type="shell_command">mkdir build</action>
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2
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13 <action type="shell_command">ls</action>
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7
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14 <action type="shell_command">folder=pwd</action>
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15 <action type="shell_command">cmake . -DCMAKE_BUILD_TYPE=release -DCMAKE_INSTALL_PREFIX=/usr/local 2>folder/errorfile</action>
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16 <action type="shell_command">make</action>
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7
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17 <action type="shell_command">make install</action>
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6
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18 <!-- <action type="...">move bin/breakdancer-max to installdir</action> -->
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19 </actions>
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20 </install>
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21 <readme>
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22 </readme>
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23 </package>
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24 </tool_dependency>
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25
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