Mercurial > repos > jeremie > package_pindel_0_2_5
comparison tool_dependencies.xml @ 6:3f6014ca8e19 draft
Uploaded
| author | jeremie |
|---|---|
| date | Thu, 19 Jun 2014 09:25:22 -0400 |
| parents | 4e8cf8b6b572 |
| children | 83fe7d36a64d |
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| 5:4e8cf8b6b572 | 6:3f6014ca8e19 |
|---|---|
| 4 <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> | 4 <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> |
| 5 </package> | 5 </package> |
| 6 <package name="pindel" version="0.2.5"> | 6 <package name="pindel" version="0.2.5"> |
| 7 <install version="1.0"> | 7 <install version="1.0"> |
| 8 <actions> | 8 <actions> |
| 9 <action type="download_by_url">https://github.com/genome/pindel/archive/master.zip</action> | 9 <action type="download_by_url" target_filename="pindel-master.zip">https://github.com/genome/pindel/archive/master.zip</action> |
| 10 <action type="shell_command">unzip pindel-master.zip -d pindel</action> | |
| 10 <!-- <action type="shell_command">cd pindel</action> | 11 <!-- <action type="shell_command">cd pindel</action> |
| 11 <action type="shell_command">make SAMTOOLS=~/samtools</action> --> | 12 <action type="shell_command">make SAMTOOLS=~/samtools</action> |
| 13 <action type="move_file"> | |
| 14 <source>pindel</source> | |
| 15 <destination>$INSTALL_DIR/</destination> | |
| 16 </action>--> | |
| 12 <action type="set_environment"> | 17 <action type="set_environment"> |
| 13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | 18 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> |
| 14 </action> | 19 </action> |
| 15 </actions> | 20 </actions> |
| 16 </install> | 21 </install> |