Mercurial > repos > jeremie > package_pindel_0_2_5

comparison tool_dependencies.xml @ 12:4a11086ede4b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author jeremie
date Thu, 19 Jun 2014 10:22:16 -0400
parents aea585951b97
children b77ffd27beda
comparison
equal deleted inserted replaced
11:aea585951b97 12:4a11086ede4b
6 <package name="pindel" version="0.2.5"> 6 <package name="pindel" version="0.2.5">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <!-- <action type="shell_command">git clone https://github.com/genome/pindel.git pindel</action> --> 9 <!-- <action type="shell_command">git clone https://github.com/genome/pindel.git pindel</action> -->
10 <action type="download_by_url" target_filename="pindel-master.zip">https://github.com/genome/pindel/archive/master.zip</action> 10 <action type="download_by_url" target_filename="pindel-master.zip">https://github.com/genome/pindel/archive/master.zip</action>
11 <action type="shell_command">ls</action> 11 <!-- <action type="shell_command">ls</action>
12 <action type="shell_command">cd ..</action> 12 <action type="move_directory_files">
13 <action type="shell_command">ls</action>
14 <!-- <action type="move_directory_files">
15 <source_directory>.</source_directory> 13 <source_directory>.</source_directory>
16 <destination_directory>$INSTALL_DIR</destination_directory> 14 <destination_directory>$INSTALL_DIR</destination_directory>
17 </action> --> 15 </action>
18 <!-- <action type="shell_command">unzip pindel-master.zip -d pindel</action>--> --> 16 <action type="shell_command">unzip pindel-master.zip -d pindel</action>
19 <action type="shell_command">cd master</action> 17 <action type="shell_command">cd master</action>
20 <action type="shell_command">make SAMTOOLS=~/samtools</action> 18 <action type="shell_command">make SAMTOOLS=~/samtools</action> -->
21 <action type="shell_command">./INSTALL ~/samtools</action> 19 <action type="shell_command">./INSTALL ~/samtools</action>
22 <action type="move_file"> 20 <action type="move_file">
23 <source>pindel</source> 21 <source>pindel</source>
24 <destination>$INSTALL_DIR/</destination> 22 <destination>$INSTALL_DIR/</destination>
25 </action> 23 </action>