Mercurial > repos > jeremie > package_pindel_0_2_5
comparison tool_dependencies.xml @ 9:9053dc56c65a draft
Uploaded
| author | jeremie |
|---|---|
| date | Thu, 19 Jun 2014 09:46:32 -0400 |
| parents | c8bdd88ddbba |
| children | ea5aad668099 |
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| 8:c8bdd88ddbba | 9:9053dc56c65a |
|---|---|
| 4 <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> | 4 <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> |
| 5 </package> | 5 </package> |
| 6 <package name="pindel" version="0.2.5"> | 6 <package name="pindel" version="0.2.5"> |
| 7 <install version="1.0"> | 7 <install version="1.0"> |
| 8 <actions> | 8 <actions> |
| 9 <action type="download_by_url" target_filename="pindel-master.zip">https://github.com/genome/pindel/archive/master.zip</action> | 9 <action type="shell_command">git clone https://github.com/genome/pindel.git pindel</action> |
| 10 <action type="move_directory_files"> | 10 <!-- <action type="download_by_url" target_filename="pindel-master.zip">https://github.com/genome/pindel/archive/master.zip</action> --> |
| 11 <!-- <action type="move_directory_files"> | |
| 11 <source_directory>.</source_directory> | 12 <source_directory>.</source_directory> |
| 12 <destination_directory>$INSTALL_DIR</destination_directory> | 13 <destination_directory>$INSTALL_DIR</destination_directory> |
| 13 </action> | 14 </action> --> |
| 14 <action type="shell_command">unzip pindel-master.zip -d pindel</action>--> | 15 <!-- <action type="shell_command">unzip pindel-master.zip -d pindel</action>--> --> |
| 15 <action type="shell_command">cd pindel</action> | 16 <action type="shell_command">cd pindel</action> |
| 16 <action type="shell_command">make SAMTOOLS=~/samtools</action> | 17 <action type="shell_command">make SAMTOOLS=~/samtools</action> |
| 17 <action type="move_file"> | 18 <action type="move_file"> |
| 18 <source>pindel</source> | 19 <source>pindel</source> |
| 19 <destination>$INSTALL_DIR/</destination> | 20 <destination>$INSTALL_DIR/</destination> |