# HG changeset patch
# User jeremie
# Date 1403184616 14400
# Node ID 83fe7d36a64da26ba84a48504c43dd77819e0578
# Parent  3f6014ca8e193e5faa772d4ff729afb5c8708641
Uploaded

diff -r 3f6014ca8e19 -r 83fe7d36a64d tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Jun 19 09:25:22 2014 -0400
+++ b/tool_dependencies.xml	Thu Jun 19 09:30:16 2014 -0400
@@ -7,13 +7,13 @@
 		<install version="1.0">
 			<actions>
 				<action type="download_by_url" target_filename="pindel-master.zip">https://github.com/genome/pindel/archive/master.zip</action>
-				<action type="shell_command">unzip pindel-master.zip -d pindel</action>
-				<!-- <action type="shell_command">cd pindel</action>
+				<!--<action type="shell_command">unzip pindel-master.zip -d pindel</action>-->
+				<action type="shell_command">cd pindel-master</action>
 				<action type="shell_command">make SAMTOOLS=~/samtools</action> 
 				<action type="move_file">
 					<source>pindel</source>
 					<destination>$INSTALL_DIR/</destination>
-				</action>-->
+				</action>
 				<action type="set_environment">
 					<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
 				</action>