# HG changeset patch
# User jeremie
# Date 1403275233 14400
# Node ID ae37c0fd6590e63cb896f41431e63d7c126b24c8
# Parent  47817c9684221b227e334cd47598074fd003381d
Uploaded

diff -r 47817c968422 -r ae37c0fd6590 tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Jun 20 10:28:26 2014 -0400
+++ b/tool_dependencies.xml	Fri Jun 20 10:40:33 2014 -0400
@@ -31,7 +31,7 @@
 				COLOWOBD15_TIME=80
 				SIM1CHRVS20305_TIME=60" > Makefile.local
 				</action>
-				<action type="shell_command">make SAMTOOLS=$samtools THREADS=2</action>
+				<action type="shell_command">make SAMTOOLS=samtools THREADS=2</action>
 				<action type="move_file">
 					<source>pindel</source>
 					<destination>$INSTALL_DIR/</destination>