Mercurial > repos > jeremie > package_pindel_0_2_5

changeset 1:a419acd3fd50 draft

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Deleted selected files
author jeremie
date Thu, 19 Jun 2014 08:55:55 -0400
parents 25c3a2817b23
children 754f6ec017f7
files tool_dependencies.xml
diffstat 1 files changed, 0 insertions(+), 21 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Jun 19 08:53:58 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,21 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-	<package name="samtools" version="0.1.18">
-		<repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
-	</package>
-	<package name="pindel" version="0.2.5">
-		<install version="0.2.5">
-			<actions>
-				<action type="download_by_url">https://github.com/genome/pindel/archive/master.zip</action>
-				<action type="shell_command">unzip pindel-master.zip -d pindel</action>
-				<action type="shell_command">cd pindel</action>
-				<action type="shell_command">make SAMTOOLS=~/samtools</action>
-				<action type="set_environment">
-					<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
-				</action>
-			</actions>
-		</install>
-		<readme>
-		</readme>
-	</package>
-</tool_dependency>