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Fixed SPAN_JAR environment variable setup
author jetbrains
date Thu, 15 Nov 2018 11:30:01 -0500
parents 1f0c4f0a9c3b
children d87ecbc477d8
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <!--
    Package for downloading latest successful development tools.
    https://galaxyproject.org/toolshed/tool-dependencies-tag-sets/
    -->
    <package name="package_span_jar" version="0.7.1.4272" prior_installation_required="True">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://download.jetbrains.com/biolabs/span/span-0.7.1.4272.jar</action>
                <action type="move_directory_files">
                    <source_directory>.</source_directory>
                    <destination_directory>$INSTALL_DIR/</destination_directory>
                </action>
                <!-- Set environment variable SPAN_JAR so Python script knows where to look -->
                <action type="set_environment">
                    <environment_variable name="SPAN_JAR" action="set_to">$INSTALL_DIR/span-0.7.1.4272.jar</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
            Downloads SPAN Semi-supervised Peak Analyzer jar distribution file.
        </readme>
    </package>
</tool_dependency>