Mercurial > repos > jfb > commonality_finder
comparison C and D finder/commonality-working feb 21 20.R @ 3:6eacb089b655 draft
Uploaded
author | jfb |
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date | Mon, 24 Feb 2020 17:54:14 -0500 |
parents | a20e7cc7e0c9 |
children |
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2:a20e7cc7e0c9 | 3:6eacb089b655 |
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1 FirstSubstrateSet<- read.csv("r1sub.csv", stringsAsFactors=FALSE, header = FALSE) | 1 FirstSubstrateSet<- read.csv("input1.csv", stringsAsFactors=FALSE, header = FALSE) |
2 Firstsubbackfreq<- read.csv("r1sbf.csv", header=FALSE, stringsAsFactors=FALSE) | 2 Firstsubbackfreq<- read.csv("input2.csv", header=FALSE, stringsAsFactors=FALSE) |
3 SubstrateHeader<-FirstSubstrateSet[1,] | 3 SubstrateHeader<-FirstSubstrateSet[1,] |
4 FirstSubstrateSet<- FirstSubstrateSet[2:nrow(FirstSubstrateSet),] | 4 FirstSubstrateSet<- FirstSubstrateSet[2:nrow(FirstSubstrateSet),] |
5 if(nrow(Firstsubbackfreq[1,]>35)){ | 5 if(nrow(Firstsubbackfreq[1,]>35)){ |
6 if(grepl(pattern = "Properties", x=Firstsubbackfreq[1,22])){ | 6 if(grepl(pattern = "Properties", x=Firstsubbackfreq[1,22])){ |
7 Firstsubbackfreq<-t(Firstsubbackfreq) | 7 Firstsubbackfreq<-t(Firstsubbackfreq) |
8 } | 8 } |
9 } | 9 } |
10 | 10 |
11 | 11 |
12 SecondSubstrateSet<- read.csv("r1sub.csv", stringsAsFactors=FALSE, header = FALSE) | 12 SecondSubstrateSet<- read.csv("input3.csv", stringsAsFactors=FALSE, header = FALSE) |
13 Secondsubbackfreq<- read.csv("r1sbf.csv", header=FALSE, stringsAsFactors=FALSE) | 13 Secondsubbackfreq<- read.csv("input4.csv", header=FALSE, stringsAsFactors=FALSE) |
14 SecondSubstrateSet<- SecondSubstrateSet[2:nrow(SecondSubstrateSet),] | 14 SecondSubstrateSet<- SecondSubstrateSet[2:nrow(SecondSubstrateSet),] |
15 if(nrow(Secondsubbackfreq[1,]>35)){ | 15 if(nrow(Secondsubbackfreq[1,]>35)){ |
16 if(grepl(pattern = "Properties", x=Secondsubbackfreq[1,22])){ | 16 if(grepl(pattern = "Properties", x=Secondsubbackfreq[1,22])){ |
17 Secondsubbackfreq<-t(Secondsubbackfreq) | 17 Secondsubbackfreq<-t(Secondsubbackfreq) |
18 } | 18 } |
19 } | 19 } |
20 | 20 |
21 | 21 |
22 ThirdSubstrateSet<- read.csv("r2sub.csv", stringsAsFactors=FALSE, header = FALSE) | 22 ThirdSubstrateSet<- read.csv("input5.csv", stringsAsFactors=FALSE, header = FALSE) |
23 Thirdsubbackfreq<- read.csv("r2sbf.csv", header=FALSE, stringsAsFactors=FALSE) | 23 Thirdsubbackfreq<- read.csv("input6.csv", header=FALSE, stringsAsFactors=FALSE) |
24 ThirdSubstrateSet<- ThirdSubstrateSet[2:nrow(ThirdSubstrateSet),] | 24 ThirdSubstrateSet<- ThirdSubstrateSet[2:nrow(ThirdSubstrateSet),] |
25 if(nrow(Thirdsubbackfreq[1,]>35)){ | 25 if(nrow(Thirdsubbackfreq[1,]>35)){ |
26 if(grepl(pattern = "Properties", x=Thirdsubbackfreq[1,22])){ | 26 if(grepl(pattern = "Properties", x=Thirdsubbackfreq[1,22])){ |
27 Thirdsubbackfreq<-t(Thirdsubbackfreq) | 27 Thirdsubbackfreq<-t(Thirdsubbackfreq) |
28 } | 28 } |