Mercurial > repos > jfb > difference_finder

comparison all stuff/differenceFinder.xml @ 2:beba4066121e draft

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author jfb
date Wed, 16 Jan 2019 14:33:39 -0500
parents 23eea82f5192
children dff99bed3f56
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1:110a74dff8e1 2:beba4066121e
11 11
12 Rscript '$__tool_directory__/Difference finderMADE 7 TO 7 1-15-2019.R' 12 Rscript '$__tool_directory__/Difference finderMADE 7 TO 7 1-15-2019.R'
13 ]]></command> 13 ]]></command>
14 <inputs> 14 <inputs>
15 <param format="csv" name="input1" type="data" label="First Substrate Set"/> 15 <param format="csv" name="input1" type="data" label="First Substrate Set"/>
16 <param format="csv" name="input2" type="data" label="First Substrate Background Frequency"/> 16 <param format="csv" name="input2" type="data" label="First Substrate Background Frequency"/>
17 <param format="csv" name="input3" type="data" label="Second Substrate Set"/> 17 <param format="csv" name="input3" type="data" label="Second Substrate Set"/>
18 <param format="csv" name="input4" type="data" label="Second Substrate Background Frequency"/> 18 <param format="csv" name="input4" type="data" label="Second Substrate Background Frequency"/>
19 <param name="outGroup" type="text" value="kinase" label="Kinase Name"/> 19 <param name="outGroup" type="text" value="kinase" label="Kinase Name"/>
20 </inputs> 20 </inputs>
21 <outputs> 21 <outputs>
22 <data format="csv" name="substrates1" from_work_dir="1R1 substrates.csv" label="${outGroup}_First_Unshared_Substrates.csv"/> 22 <data format="csv" name="substrates1" from_work_dir="1RS.csv" label="${outGroup}_First_Unshared_Substrates.csv"/>
23 <data format="csv" name="SBF1" from_work_dir="1R1 SBF.csv" label="${outGroup}_First_Unshared_SBF.csv"/> 23 <data format="csv" name="SBF1" from_work_dir="1RSBF.csv" label="${outGroup}_First_Unshared_SBF.csv"/>
24 24 <data format="csv" name="substrates2" from_work_dir="2RS.csv" label="${outGroup}_Second_Unshared_Substrates.csv"/>
25 <data format="csv" name="substrates2" from_work_dir="1R2 subs.csv" label="${outGroup}_Second_Unshared_Substrates.csv"/> 25 <data format="csv" name="SBF2" from_work_dir="2RSBF.csv" label="${outGroup}_Second_Unshared_SubstratesSBF.csv"/>
26 <data format="csv" name="SBF2" from_work_dir="1R2 SBf.csv" label="${outGroup}_Second_Unshared_SubstratesSBF.csv"/>
27 </outputs> 26 </outputs>
28 <tests> 27 <tests>
29 <test> 28 <test>
30 <param name="input1.csv" ftype="csv" value="input1.csv"/> 29 <param name="input1.csv" ftype="csv" value="input1.csv"/>
31 <param name="positives" ftype="csv" value="substrates.csv"/> 30 <param name="positives" ftype="csv" value="substrates.csv"/>