Mercurial > repos > jfb > kinamine_y_for_peptide_shaker

diff KM Y PS/Kinamine_PS.xml @ 11:37e9bb9be4bf draft

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author jfb
date Tue, 04 Feb 2020 14:13:05 -0500
parents 0438f8825718
children 734251420421
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--- a/KM Y PS/Kinamine_PS.xml	Tue Feb 04 11:20:26 2020 -0500
+++ b/KM Y PS/Kinamine_PS.xml	Tue Feb 04 14:13:05 2020 -0500
@@ -34,8 +34,6 @@
 Additionally, all discovered peptides are assumed to have come from a protein.  For every phospho(Y) peptide, KinaMine takes the associated protein accession number, searches the FASTA file for that accession number and returns the amino acid percent composition of the protein(s) which that peptide came from.  This file is the *Substrate Background Frequency* file
 This tool is intended to be used in conjunction with Negative Motif Finder and Kinatest, the three together creating a GalaxyP version of the KINATEST-ID workbook.
 
-java -Djava.awt.headless=true -jar JavaApplication4.jar psm.tabular reference.fasta outputs 0.5 output
-
 ===========
 
 Inputs
@@ -53,7 +51,7 @@
 
     ]]></help>
     <citations>
-        <citation type="doi">10.1021/ja507164a</citation>
+        <citation type="doi">10.1074/mcp.RA118.001111</citation>
     </citations>
 </tool>