# HG changeset patch
# User jfb
# Date 1568751502 14400
# Node ID 0438f8825718a6b2db8221dbe643da0a25ef717d
# Parent  5b4bd0d94cdd0529709711268d26d9d8139b3ffc
Uploaded

diff -r 5b4bd0d94cdd -r 0438f8825718 KM Y PS/JavaApplication4.jar
Binary file KM Y PS/JavaApplication4.jar has changed
diff -r 5b4bd0d94cdd -r 0438f8825718 KM Y PS/Kinamine_PS.xml
--- a/KM Y PS/Kinamine_PS.xml	Tue Sep 17 14:46:37 2019 -0400
+++ b/KM Y PS/Kinamine_PS.xml	Tue Sep 17 16:18:22 2019 -0400
@@ -34,6 +34,8 @@
 Additionally, all discovered peptides are assumed to have come from a protein.  For every phospho(Y) peptide, KinaMine takes the associated protein accession number, searches the FASTA file for that accession number and returns the amino acid percent composition of the protein(s) which that peptide came from.  This file is the *Substrate Background Frequency* file
 This tool is intended to be used in conjunction with Negative Motif Finder and Kinatest, the three together creating a GalaxyP version of the KINATEST-ID workbook.
 
+java -Djava.awt.headless=true -jar JavaApplication4.jar psm.tabular reference.fasta outputs 0.5 output
+
 ===========
 
 Inputs