# HG changeset patch
# User jfb
# Date 1580843585 18000
# Node ID 37e9bb9be4bf553dbefab8d0741413fde9868146
# Parent  94167015c3d106f5b440dae0e1b1ec0f1fdbcd8e
Uploaded

diff -r 94167015c3d1 -r 37e9bb9be4bf KM Y PS/Kinamine_PS.xml
--- a/KM Y PS/Kinamine_PS.xml	Tue Feb 04 11:20:26 2020 -0500
+++ b/KM Y PS/Kinamine_PS.xml	Tue Feb 04 14:13:05 2020 -0500
@@ -34,8 +34,6 @@
 Additionally, all discovered peptides are assumed to have come from a protein.  For every phospho(Y) peptide, KinaMine takes the associated protein accession number, searches the FASTA file for that accession number and returns the amino acid percent composition of the protein(s) which that peptide came from.  This file is the *Substrate Background Frequency* file
 This tool is intended to be used in conjunction with Negative Motif Finder and Kinatest, the three together creating a GalaxyP version of the KINATEST-ID workbook.
 
-java -Djava.awt.headless=true -jar JavaApplication4.jar psm.tabular reference.fasta outputs 0.5 output
-
 ===========
 
 Inputs
@@ -53,7 +51,7 @@
 
     ]]></help>
     <citations>
-        <citation type="doi">10.1021/ja507164a</citation>
+        <citation type="doi">10.1074/mcp.RA118.001111</citation>
     </citations>
 </tool>