Mercurial > repos > jfb > kinatest_r_7_7testing

comparison kinatestid_r/kinatestid_r.xml @ 15:36ef4ff2d130 draft

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author jfb
date Thu, 08 Feb 2018 15:39:19 -0500
parents cf93d3535a31
children 26ef4add9f7b
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14:da1012f014bd 15:36ef4ff2d130
6 <command><![CDATA[ 6 <command><![CDATA[
7 ln -s '$__tool_directory__/screener7-7.csv' screener && 7 ln -s '$__tool_directory__/screener7-7.csv' screener &&
8 ln -s '$substrates' input1 && 8 ln -s '$substrates' input1 &&
9 ln -s '$negatives' input2 && 9 ln -s '$negatives' input2 &&
10 ln -s '$SBF' input3 && 10 ln -s '$SBF' input3 &&
11 Rscript '$__tool_directory__/Kinatest-R_part1.R' && 11 Rscript '$__tool_directory__/Kinatest-R.R' &&
12 Rscript '$__tool_directory__/Kinatest-R_part2.R' &&
13 mv output1 output1.csv && 12 mv output1 output1.csv &&
14 mv output2 output2.csv && 13 mv output2 output2.csv &&
15 mv output3 output3.csv 14 mv output3 output3.csv
16 ]]></command> 15 ]]></command>
17 <inputs> 16 <inputs>