Mercurial > repos > jfb > kinatest_scoring_function

comparison scoring function/KinatestScoring.xml @ 4:1d532e5664dd draft

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author jfb
date Sat, 27 Apr 2019 15:47:08 -0400
parents 3de8a42a39f8
children 9243cdb86997
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3:9ade210d19be 4:1d532e5664dd
5 </requirements> 5 </requirements>
6 <command><![CDATA[ 6 <command><![CDATA[
7 ln -s '$__tool_directory__/screener.csv' screener.csv && 7 ln -s '$__tool_directory__/screener.csv' screener.csv &&
8 ln -s '$FisherTable' Fisher-Char.csv && 8 ln -s '$FisherTable' Fisher-Char.csv &&
9 ln -s '$CharacterizationTable' Fisher-Table.csv && 9 ln -s '$CharacterizationTable' Fisher-Table.csv &&
10 Rscript '$__tool_directory__/KinatestFisherScoring.R' outGroup 10 Rscript '$__tool_directory__/KinatestFisherScoring.R' outGroup M6 M5 M4 M3 M2 M1 D0 P1 P2 P3 P4 P5 P6
11 ]]></command> 11 ]]></command>
12 <inputs> 12 <inputs>
13 <param format="csv" name="FisherTable" type="data" label="Fisher Odds Table output"/> 13 <param format="csv" name="FisherTable" type="data" label="Fisher Odds Table output"/>
14 <param format="csv" name="CharacterizationTable" type="data" label="Characterization Table Output"/> 14 <param format="csv" name="CharacterizationTable" type="data" label="Characterization Table Output"/>
15 <param name="M6" type="text" value="ACD" label="Amino Acid(s) in -6 Position"/> 15 <param name="M6" type="text" value="ACD" label="Amino Acid(s) in -6 Position"/>