Mercurial > repos > jfb > kinatest_scoring_function
comparison scoring function/KinatestScoring.xml @ 14:6897a83b9096 draft default tip
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author | jfb |
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date | Mon, 07 Oct 2019 14:48:16 -0400 |
parents | 7dff31e9a48f |
children |
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13:3ef6de42310d | 14:6897a83b9096 |
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3 <requirements> | 3 <requirements> |
4 <requirement type="package">R</requirement> | 4 <requirement type="package">R</requirement> |
5 </requirements> | 5 </requirements> |
6 <command><![CDATA[ | 6 <command><![CDATA[ |
7 ln -s '$__tool_directory__/screener.csv' screener.csv && | 7 ln -s '$__tool_directory__/screener.csv' screener.csv && |
8 ln -s '$FisherTable' Fisher-Char.csv && | 8 ln -s '$FisherTable' Fisher-Table.csv && |
9 ln -s '$CharacterizationTable' Fisher-Table.csv && | 9 ln -s '$CharacterizationTable' Fisher-Char.csv && |
10 Rscript '$__tool_directory__/KinatestFisherScoring.R' $outGroup $Ms $Mfi $Mfo $Mth $Mtw $Mo $Dz $Po $Ptw $Pth $Pfo $Pfi $Ps | 10 Rscript '$__tool_directory__/KinatestFisherScoring.R' $outGroup $Ms $Mfi $Mfo $Mth $Mtw $Mo $Dz $Po $Ptw $Pth $Pfo $Pfi $Ps |
11 ]]></command> | 11 ]]></command> |
12 <inputs> | 12 <inputs> |
13 <param format="csv" name="FisherTable" type="data" label="Fisher Odds Table output"/> | 13 <param format="csv" name="FisherTable" type="data" label="Fisher Odds Table output"/> |
14 <param format="csv" name="CharacterizationTable" type="data" label="Characterization Table Output"/> | 14 <param format="csv" name="CharacterizationTable" type="data" label="Characterization Table Output"/> |