Mercurial > repos > jfb > kinatest_scoring_function

comparison scoring function/KinatestScoring.xml @ 1:876d4ca7289d draft

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author jfb
date Sat, 27 Apr 2019 15:11:24 -0400
parents ed9068208721
children 3de8a42a39f8
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0:ed9068208721 1:876d4ca7289d
2 <description>determine if peptides will be phosphorylated</description> 2 <description>determine if peptides will be phosphorylated</description>
3 <requirements> 3 <requirements>
4 <requirement type="package">R</requirement> 4 <requirement type="package">R</requirement>
5 </requirements> 5 </requirements>
6 <command><![CDATA[ 6 <command><![CDATA[
7 ln -s '$__tool_directory__/screener7-7.csv' screener.csv &&
7 ln -s '$FisherTable' Fisher-Char.csv && 8 ln -s '$FisherTable' Fisher-Char.csv &&
8 ln -s '$CharacterizationTable' Fisher-Table.csv && 9 ln -s '$CharacterizationTable' Fisher-Table.csv &&
9 Rscript '$__tool_directory__/KinatestFisherScoring.R' outGroup 10 Rscript '$__tool_directory__/KinatestFisherScoring.R' outGroup
10 ]]></command> 11 ]]></command>
11 <inputs> 12 <inputs>