Mercurial > repos > jfb > kinatest_scoring_function

comparison scoring function/KinatestScoring.xml @ 14:6897a83b9096 draft default tip

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author jfb
date Mon, 07 Oct 2019 14:48:16 -0400
parents 7dff31e9a48f
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13:3ef6de42310d 14:6897a83b9096
3 <requirements> 3 <requirements>
4 <requirement type="package">R</requirement> 4 <requirement type="package">R</requirement>
5 </requirements> 5 </requirements>
6 <command><![CDATA[ 6 <command><![CDATA[
7 ln -s '$__tool_directory__/screener.csv' screener.csv && 7 ln -s '$__tool_directory__/screener.csv' screener.csv &&
8 ln -s '$FisherTable' Fisher-Char.csv && 8 ln -s '$FisherTable' Fisher-Table.csv &&
9 ln -s '$CharacterizationTable' Fisher-Table.csv && 9 ln -s '$CharacterizationTable' Fisher-Char.csv &&
10 Rscript '$__tool_directory__/KinatestFisherScoring.R' $outGroup $Ms $Mfi $Mfo $Mth $Mtw $Mo $Dz $Po $Ptw $Pth $Pfo $Pfi $Ps 10 Rscript '$__tool_directory__/KinatestFisherScoring.R' $outGroup $Ms $Mfi $Mfo $Mth $Mtw $Mo $Dz $Po $Ptw $Pth $Pfo $Pfi $Ps
11 ]]></command> 11 ]]></command>
12 <inputs> 12 <inputs>
13 <param format="csv" name="FisherTable" type="data" label="Fisher Odds Table output"/> 13 <param format="csv" name="FisherTable" type="data" label="Fisher Odds Table output"/>
14 <param format="csv" name="CharacterizationTable" type="data" label="Characterization Table Output"/> 14 <param format="csv" name="CharacterizationTable" type="data" label="Characterization Table Output"/>