Mercurial > repos > jfb > negative_motif_finder_7_7

comparison NMF/NMF.xml @ 4:220d4359ec9b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author jfb
date Thu, 06 Feb 2020 14:20:36 -0500
parents a69be20d500d
children 5edbfbeba354
comparison
equal deleted inserted replaced
3:a69be20d500d 4:220d4359ec9b
5 </requirements> 5 </requirements>
6 <command><![CDATA[ 6 <command><![CDATA[
7 ln -s '$FASTA' input1.tabular && 7 ln -s '$FASTA' input1.tabular &&
8 ln -s '$positives' input2.csv && 8 ln -s '$positives' input2.csv &&
9 ln -s '$SBF' input3.csv && 9 ln -s '$SBF' input3.csv &&
10 Rscript '$__tool_directory__/NMF-working-1-9-18.R' 10 Rscript '$__tool_directory__/NMF-working-2-5-20.R'
11 ]]></command> 11 ]]></command>
12 <inputs> 12 <inputs>
13 <param format="csv" name="SBF" type="data" label="Substrate Background Frequency"/> 13 <param format="csv" name="SBF" type="data" label="Substrate Background Frequency"/>
14 <param format="tabular" name="FASTA" type="data" label="Human Proteome Reference"/> 14 <param format="tabular" name="FASTA" type="data" label="Human Proteome Reference"/>
15 <param format="csv" name="positives" type="data" label="Positive/Phosphorylated Substrate List"/> 15 <param format="csv" name="positives" type="data" label="Positive/Phosphorylated Substrate List"/>