Mercurial > repos > jfb > negative_motif_finder_7_7

comparison NMF/NMF.xml @ 5:5edbfbeba354 draft default tip

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author jfb
date Tue, 14 Jul 2020 20:01:02 -0400
parents 220d4359ec9b
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4:220d4359ec9b 5:5edbfbeba354
5 </requirements> 5 </requirements>
6 <command><![CDATA[ 6 <command><![CDATA[
7 ln -s '$FASTA' input1.tabular && 7 ln -s '$FASTA' input1.tabular &&
8 ln -s '$positives' input2.csv && 8 ln -s '$positives' input2.csv &&
9 ln -s '$SBF' input3.csv && 9 ln -s '$SBF' input3.csv &&
10 Rscript '$__tool_directory__/NMF-working-2-5-20.R' 10 Rscript '$__tool_directory__/NMF-working-7-4-2020.R'
11 ]]></command> 11 ]]></command>
12 <inputs> 12 <inputs>
13 <param format="csv" name="SBF" type="data" label="Substrate Background Frequency"/> 13 <param format="csv" name="SBF" type="data" label="Substrate Background Frequency"/>
14 <param format="tabular" name="FASTA" type="data" label="Human Proteome Reference"/> 14 <param format="tabular" name="FASTA" type="data" label="Human Proteome Reference"/>
15 <param format="csv" name="positives" type="data" label="Positive/Phosphorylated Substrate List"/> 15 <param format="csv" name="positives" type="data" label="Positive/Phosphorylated Substrate List"/>