Mercurial > repos > jfb > negative_motif_finder_7_7
diff NMF/test-data/SBF.csv @ 0:dd301fc4b54e draft
Uploaded
| author | jfb |
|---|---|
| date | Fri, 23 Feb 2018 16:37:29 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/NMF/test-data/SBF.csv Fri Feb 23 16:37:29 2018 -0500 @@ -0,0 +1,242 @@ +Amino Acids,A,C,D,E,F,G,H,I,K,L,M,N,P,Q,R,S,T,V,W,Y,Properties,Hydrophobic,Polar,Small,Negative,Postive,Amide,Large Aliphatic,Small Aliphatic,Aromatic,Hydroxy,,Number of Y,Number of pY,Total AAs +sp|P06493|CDK1_HUMAN,4.04040404,0.336700337,6.397306397,6.060606061,3.703703704,6.060606061,2.693602694,7.407407407,8.080808081,12.12121212,2.693602694,3.367003367,5.050505051,3.367003367,5.050505051,7.070707071,4.377104377,6.060606061,1.346801347,4.713804714,,48.48484848,35.01683502,42.76094276,12.45791246,15.82491582,6.734006734,19.52861953,16.16161616,9.764309764,11.44781145,,14,1,297 +sp|P13639|EF2_HUMAN,7.226107226,1.981351981,6.060606061,7.226107226,4.079254079,7.692307692,1.864801865,6.293706294,7.575757576,8.508158508,3.263403263,3.146853147,5.361305361,3.37995338,5.128205128,5.128205128,4.778554779,8.041958042,0.815850816,2.447552448,,50.34965035,34.38228438,49.41724942,13.28671329,14.56876457,6.526806527,14.8018648,22.96037296,7.342657343,9.906759907,,21,4,858 +sp|P08621|RU17_HUMAN,4.576659039,0.228832952,9.610983982,12.12814645,1.601830664,10.06864989,2.745995423,2.059496568,5.034324943,4.576659039,2.059496568,2.059496568,7.551487414,1.372997712,21.05263158,5.263157895,2.288329519,2.288329519,0.457665904,2.974828375,,30.89244851,54.00457666,43.93592677,21.73913043,28.83295195,3.432494279,6.636155606,16.93363844,5.034324943,7.551487414,,13,2,437 +sp|P62899|RL31_HUMAN,6.4,0,4,6.4,2.4,5.6,1.6,6.4,12.8,4.8,2.4,7.2,4.8,0.8,11.2,2.4,7.2,9.6,0.8,3.2,,41.6,44,47.2,10.4,25.6,8,11.2,21.6,6.4,9.6,,4,1,125 +sp|P09874|PARP1_HUMAN,6.607495069,1.380670611,6.114398422,7.396449704,2.958579882,7.001972387,1.873767258,4.733727811,12.4260355,8.875739645,2.465483235,3.550295858,4.339250493,3.353057199,3.25443787,8.382642998,4.142011834,6.706114398,1.282051282,3.15581854,,45.16765286,37.96844181,48.22485207,13.51084813,17.55424063,6.903353057,13.60946746,20.31558185,7.396449704,12.52465483,,32,2,1014 +sp|P38159|RBMX_HUMAN,3.836317136,0,8.695652174,3.324808184,1.79028133,15.60102302,0.767263427,0.767263427,3.324808184,3.069053708,2.046035806,1.79028133,11.50895141,0.511508951,14.57800512,16.11253197,2.557544757,2.813299233,0,6.905370844,,36.8286445,32.99232737,62.91560102,12.02046036,18.67007673,2.301790281,3.836317136,22.25063939,8.695652174,18.67007673,,27,2,391 +sp|P08238|HS90B_HUMAN,5.248618785,0.828729282,7.044198895,13.25966851,3.591160221,4.696132597,1.79558011,6.629834254,10.35911602,8.563535912,2.624309392,3.867403315,3.17679558,2.900552486,4.419889503,6.629834254,4.696132597,5.801104972,0.552486188,3.314917127,,41.85082873,43.64640884,41.98895028,20.3038674,16.57458564,6.767955801,15.19337017,15.74585635,7.458563536,11.32596685,,24,8,724 +sp|P07900|HS90A_HUMAN,4.644808743,0.956284153,7.37704918,13.25136612,3.415300546,4.371584699,1.639344262,6.830601093,10.92896175,8.469945355,2.732240437,4.234972678,2.868852459,3.415300546,4.098360656,5.737704918,5.87431694,5.191256831,0.546448087,3.415300546,,40.57377049,44.94535519,41.2568306,20.6284153,16.66666667,7.650273224,15.30054645,14.20765027,7.37704918,11.61202186,,25,7,732 +sp|P14866|HNRPL_HUMAN,6.791171477,1.867572156,5.093378608,5.093378608,3.565365025,12.05432937,3.056027165,3.056027165,4.923599321,5.942275042,2.376910017,5.602716469,8.319185059,4.41426146,6.112054329,7.300509338,2.886247878,6.451612903,0.339558574,4.753820034,,47.19864177,34.29541596,56.36672326,10.18675722,14.09168081,10.01697793,8.998302207,25.29711375,8.658743633,10.18675722,,28,3,589 +sp|P31942|HNRH3_HUMAN,4.624277457,0.289017341,7.225433526,4.046242775,4.624277457,24.27745665,2.89017341,4.046242775,2.312138728,3.468208092,4.913294798,4.624277457,3.757225434,2.312138728,8.092485549,5.49132948,2.601156069,3.179190751,0.578034682,6.647398844,,56.64739884,31.50289017,56.06936416,11.2716763,13.29479769,6.936416185,7.514450867,32.08092486,11.84971098,8.092485549,,23,1,346 +sp|P62750|RL23A_HUMAN,12.82051282,0,5.769230769,3.205128205,1.923076923,1.923076923,2.564102564,7.051282051,19.23076923,7.051282051,1.282051282,3.846153846,7.692307692,1.923076923,7.051282051,2.564102564,4.487179487,6.41025641,0,3.205128205,,41.66666667,43.58974359,45.51282051,8.974358974,28.84615385,5.769230769,14.1025641,21.15384615,5.128205128,7.051282051,,5,2,156 +sp|P60709|ACTB_HUMAN,7.733333333,1.6,6.133333333,6.933333333,3.466666667,7.466666667,2.4,7.466666667,5.066666667,7.2,4.533333333,2.4,5.066666667,3.2,4.8,6.666666667,6.933333333,5.866666667,1.066666667,4,,50.4,30.93333333,49.86666667,13.06666667,12.26666667,5.6,14.66666667,21.06666667,8.533333333,13.6,,15,8,375 +sp|P63261|ACTG_HUMAN,7.733333333,1.6,5.333333333,7.733333333,3.466666667,7.466666667,2.4,7.733333333,5.066666667,7.2,4.533333333,2.4,5.066666667,3.2,4.8,6.666666667,6.933333333,5.6,1.066666667,4,,50.4,30.93333333,48.8,13.06666667,12.26666667,5.6,14.93333333,20.8,8.533333333,13.6,,15,8,375 +sp|P60660|MYL6_HUMAN,5.298013245,1.986754967,7.284768212,11.25827815,5.298013245,9.271523179,2.649006623,2.649006623,5.960264901,8.609271523,4.635761589,5.298013245,1.986754967,3.973509934,3.311258278,2.649006623,5.960264901,9.271523179,0,2.649006623,,49.66887417,39.73509934,49.00662252,18.54304636,11.9205298,9.271523179,11.25827815,23.8410596,7.947019868,8.609271523,,4,3,151 +sp|P40939|ECHA_HUMAN,8.256880734,1.703800786,4.98034076,6.028833552,4.062909567,8.912188729,1.179554391,6.028833552,9.305373526,9.829619921,2.49017038,2.228047182,4.325032765,4.193971166,4.325032765,6.29095675,4.98034076,8.387942333,0.131061599,2.359108781,,52.16251638,32.24115334,50.0655308,11.00917431,14.80996068,6.422018349,15.85845347,25.5570118,6.553079948,11.27129751,,18,1,763 +sp|O00571|DDX3X_HUMAN,5.589123867,1.057401813,7.250755287,6.193353474,4.682779456,11.48036254,2.114803625,4.682779456,4.833836858,7.099697885,2.114803625,3.625377644,3.625377644,3.021148036,8.3081571,11.32930514,3.625377644,4.682779456,1.057401813,3.625377644,,46.07250755,35.34743202,52.26586103,13.44410876,15.25679758,6.64652568,11.78247734,21.75226586,9.365558912,14.95468278,,24,1,662 +sp|P19105|ML12A_HUMAN,6.432748538,0.584795322,11.11111111,9.356725146,7.602339181,5.263157895,1.169590643,5.263157895,8.187134503,6.432748538,5.263157895,5.847953216,3.50877193,3.50877193,5.263157895,2.923976608,8.187134503,1.754385965,0,2.339181287,,40.93567251,44.44444444,45.61403509,20.46783626,14.61988304,9.356725146,11.69590643,13.4502924,9.941520468,11.11111111,,4,2,171 +sp|O14950|ML12B_HUMAN,7.558139535,0.581395349,11.04651163,8.720930233,7.558139535,5.23255814,1.162790698,5.23255814,8.720930233,6.395348837,5.23255814,5.813953488,3.488372093,3.488372093,4.651162791,2.906976744,8.139534884,1.744186047,0,2.325581395,,41.86046512,43.60465116,46.51162791,19.76744186,14.53488372,9.302325581,11.62790698,14.53488372,9.88372093,11.04651163,,4,2,172 +sp|Q08945|SSRP1_HUMAN,4.37235543,0.846262341,6.911142454,10.43723554,4.936530324,6.629055007,1.833568406,4.090267983,10.71932299,6.770098731,2.3977433,3.94922426,3.526093089,3.102961918,6.064880113,10.1551481,4.513399154,4.795486601,0.846262341,3.102961918,,38.78702398,43.01833568,45.69816643,17.348378,18.61777151,7.052186178,10.86036671,15.79689704,8.885754584,14.66854725,,22,2,709 +sp|Q9Y3I0|RTCB_HUMAN,9.504950495,1.782178218,6.138613861,5.742574257,3.168316832,9.702970297,3.168316832,5.148514851,6.336633663,7.524752475,3.96039604,4.554455446,3.96039604,3.762376238,5.148514851,4.356435644,3.96039604,8.712871287,0.792079208,2.574257426,,52.87128713,34.85148515,52.67326733,11.88118812,14.65346535,8.316831683,12.67326733,27.92079208,6.534653465,8.316831683,,13,1,505 +sp|P30086|PEBP1_HUMAN,4.278074866,1.069518717,8.021390374,4.812834225,1.604278075,8.021390374,3.20855615,1.604278075,8.021390374,10.16042781,1.069518717,2.139037433,8.021390374,3.743315508,4.812834225,8.021390374,4.812834225,8.556149733,2.673796791,5.347593583,,44.38502674,34.75935829,52.94117647,12.8342246,16.04278075,5.882352941,11.76470588,20.85561497,9.625668449,12.8342246,,10,2,187 +sp|P52272|HNRPM_HUMAN,8.082191781,0.684931507,3.424657534,8.630136986,3.287671233,17.80821918,1.369863014,5.342465753,5.479452055,5.753424658,8.630136986,4.246575342,5.205479452,1.917808219,7.397260274,4.383561644,1.917808219,5.342465753,0.410958904,0.684931507,,56.02739726,32.46575342,51.09589041,12.05479452,14.24657534,6.164383562,11.09589041,31.23287671,4.383561644,6.301369863,,5,1,730 +sp|Q8NBS9|TXND5_HUMAN,10.18518519,2.777777778,5.324074074,7.87037037,3.935185185,8.564814815,3.472222222,1.851851852,6.018518519,10.64814815,1.157407407,2.083333333,6.481481481,4.398148148,4.166666667,4.62962963,6.018518519,5.324074074,2.083333333,3.009259259,,49.53703704,33.33333333,51.38888889,13.19444444,13.65740741,6.481481481,12.5,24.07407407,9.027777778,10.64814815,,13,1,432 +sp|P18077|RL35A_HUMAN,9.090909091,0.909090909,0.909090909,3.636363636,2.727272727,10,2.727272727,5.454545455,10,6.363636364,2.727272727,5.454545455,3.636363636,0.909090909,11.81818182,4.545454545,5.454545455,6.363636364,1.818181818,5.454545455,,50.90909091,35.45454545,46.36363636,4.545454545,24.54545455,6.363636364,11.81818182,25.45454545,10,10,,6,1,110 +sp|P10809|CH60_HUMAN,9.947643979,0.523560209,6.457242583,7.504363002,1.745200698,9.773123909,0.523560209,7.504363002,9.2495637,8.376963351,3.141361257,3.490401396,3.315881326,2.966841187,3.839441536,4.363001745,5.933682373,9.947643979,0.17452007,1.221640489,,52.35602094,34.03141361,53.7521815,13.96160558,13.61256545,6.457242583,15.88132635,29.66841187,3.141361257,10.29668412,,7,2,573 +sp|Q9BQE3|TBA1C_HUMAN,8.46325167,2.672605791,6.458797327,7.572383073,4.454342984,7.795100223,2.89532294,5.79064588,4.231625835,7.126948775,2.227171492,3.563474388,4.454342984,3.563474388,4.677060134,4.677060134,6.904231626,7.349665924,0.890868597,4.231625835,,51.00222717,32.96213808,52.33853007,14.0311804,11.80400891,7.126948775,12.91759465,23.60801782,9.576837416,11.58129176,,19,4,449 +sp|Q9NY65|TBA8_HUMAN,8.240534521,2.672605791,6.236080178,8.017817372,5.122494432,6.904231626,2.89532294,5.79064588,4.231625835,7.349665924,2.227171492,3.786191537,4.008908686,3.340757238,4.677060134,5.79064588,6.681514477,7.349665924,0.890868597,3.786191537,,50.33407572,33.18485523,51.67037862,14.25389755,11.80400891,7.126948775,13.1403118,22.49443207,9.799554566,12.47216036,,17,3,449 +sp|Q71U36|TBA1A_HUMAN,7.982261641,2.66075388,5.986696231,8.203991131,4.4345898,8.203991131,2.88248337,5.986696231,4.21286031,7.095343681,2.2172949,3.54767184,4.4345898,3.54767184,4.65631929,4.65631929,6.651884701,7.538802661,0.88691796,4.21286031,,51.2195122,33.03769401,51.66297118,14.19068736,11.75166297,7.095343681,13.08203991,23.72505543,9.534368071,11.30820399,,19,4,451 +sp|Q13748|TBA3C_HUMAN,8.888888889,2.666666667,6,8,4.444444444,7.777777778,2.888888889,5.777777778,4.222222222,7.333333333,2.222222222,3.555555556,4.444444444,3.333333333,4.666666667,4.444444444,6.444444444,7.777777778,0.888888889,4.222222222,,52,32.66666667,52,14,11.77777778,6.888888889,13.11111111,24.44444444,9.555555556,10.88888889,,19,4,450 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