|
0
|
1 <tool id="blosum" name="Blosum" version="0.5.0">
|
|
|
2 <description>Scores for peptide alignment by sequence</description>
|
|
|
3 <requirements>
|
|
|
4 <requirement type="package">openjdk</requirement>
|
|
|
5 </requirements>
|
|
|
6 <command detect_errors="aggressive"><![CDATA[
|
|
|
7 java -Djava.awt.headless=true -jar '$__tool_directory__/Blosum.jar'
|
|
|
8 ]]></command>
|
|
|
9 <inputs>
|
|
|
10 <param format="csv" name="input.csv" type="data" label="Peptide Sequences"/>
|
|
|
11 </inputs>
|
|
|
12 <outputs>
|
|
|
13 <data format="csv" name="output.csv" from_work_dir="output.csv" label="peptides with scores.csv"/>
|
|
|
14 </outputs>
|
|
|
15 <tests>
|
|
|
16 <test>
|
|
|
17 </test>
|
|
|
18 </tests>
|
|
|
19
|
|
|
20
|
|
|
21 <help><![CDATA[
|
|
|
22 This does a thing
|
|
|
23 ]]></help>
|
|
|
24 <citations>
|
|
|
25 <citation type="doi">10.1021/ja507164a</citation>
|
|
|
26 </citations>
|
|
|
27 </tool>
|
|
|
28
|
